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| Mutant Information |
|---|
| Mutant Name | FN3184-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3184-S Alignment File |
| Seed Availability | No |
| Variant Information |
|---|
Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22061247 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24930976 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39852041 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 10121071 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14564300 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31778234 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 32220955 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 34703987 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 10710523 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g147000 |
| SBS | Chr3 | 22050461 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 37263031 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 2860904 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 6159059 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6159060 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 6159061 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 28161025 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 30598181 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 5807198 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7419153 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8249403 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 8249404 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 9602901 | C-T | Homo | INTRON | |
| SBS | Chr5 | 9987553 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 19159493 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 9575734 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21629614 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr8 | 26631494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26712436 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 8407640 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14062193 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 16166841 | G-A | Homo | INTRON | |
| SBS | Chr9 | 16166846 | G-A | Homo | INTRON | |
| SBS | Chr10 | 5959718 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 6154886 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 5898740 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 5898741 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 7905724 | T-G | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 13504253 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13554774 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19393736 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13153887 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16204481 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16788431 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18414706 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26432437 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1682623 | 1682624 | 1 | |
| Deletion | Chr11 | 2663090 | 2663091 | 1 | |
| Deletion | Chr8 | 6758453 | 6758455 | 2 | |
| Deletion | Chr12 | 7624277 | 7624279 | 2 | |
| Deletion | Chr10 | 8065540 | 8065543 | 3 | |
| Deletion | Chr9 | 12421001 | 12471000 | 49999 | 4 |
| Deletion | Chr8 | 15835364 | 15835376 | 12 | |
| Deletion | Chr9 | 16385001 | 16580000 | 194999 | 22 |
| Deletion | Chr9 | 17401201 | 17401203 | 2 | |
| Deletion | Chr3 | 18443519 | 18443520 | 1 | OsKitaake03g223900 |
| Deletion | Chr7 | 28821565 | 28821566 | 1 | |
| Deletion | Chr4 | 29238318 | 29238321 | 3 | |
| Deletion | Chr4 | 33996121 | 33996132 | 11 | |
| Deletion | Chr1 | 38477977 | 38477978 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 26000645 | 26000648 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 2337709 | 2932254 | 2 |
| Inversion | Chr12 | 2337716 | 2932259 | 2 |