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Mutant Information

Mutant Name	FN3185-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3185-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23541848 C-T Hetero INTRON
SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr2 7914692 A-G Hetero INTERGENIC
SBS Chr2 29006397 A-G Homo INTERGENIC
SBS Chr2 34119897 A-T Hetero INTERGENIC
SBS Chr2 35306805 G-A Hetero UTR_5_PRIME
SBS Chr3 6722079 C-T Homo INTERGENIC
SBS Chr3 14528022 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g189200
SBS Chr3 20329801 A-G Homo INTERGENIC
SBS Chr4 6083579 C-A Homo INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 13066209 C-T Homo INTERGENIC
SBS Chr4 16691773 G-A Homo INTERGENIC
SBS Chr4 25311674 G-T Hetero INTRON
SBS Chr4 27612420 T-C Hetero INTERGENIC
SBS Chr4 36683098 T-C Hetero INTRON
SBS Chr4 36683102 G-A Hetero INTRON
SBS Chr4 36905821 A-G Hetero INTERGENIC
SBS Chr5 8933033 T-C Hetero INTERGENIC
SBS Chr5 11967047 C-T Hetero INTERGENIC
SBS Chr5 17285042 C-T Hetero INTERGENIC
SBS Chr5 27313852 G-A Hetero INTERGENIC
SBS Chr6 26441474 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g237500
SBS Chr7 903160 C-T Hetero INTRON
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr7 15791879 T-C Hetero INTERGENIC
SBS Chr8 253585 G-A Homo INTRON
SBS Chr8 4497728 T-C Homo SYNONYMOUS_CODING
SBS Chr8 11314598 C-T Homo INTERGENIC
SBS Chr9 3607672 T-G Homo INTERGENIC
SBS Chr9 16031676 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g114700
SBS Chr9 18350366 G-A Hetero INTERGENIC
SBS Chr10 4450727 T-A Homo INTERGENIC
SBS Chr10 4450728 G-T Homo INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 23799479 T-C Hetero INTERGENIC
SBS Chr11 5911283 G-A Homo INTERGENIC
SBS Chr11 5911284 C-A Homo INTERGENIC
SBS Chr11 22829782 G-A Hetero INTERGENIC
SBS Chr11 23427270 T-A Homo INTERGENIC
SBS Chr11 27056174 C-T Homo INTERGENIC
SBS Chr12 3867811 A-T Hetero INTERGENIC
SBS Chr12 4467705 C-T Hetero INTERGENIC
SBS Chr12 6665329 A-G Hetero INTERGENIC
SBS Chr12 23107126 A-G Hetero INTERGENIC
SBS Chr12 23246489 C-T Hetero INTERGENIC
SBS Chr12 26088776 G-T Hetero INTERGENIC
SBS Chr12 26088778 T-C Hetero INTERGENIC
SBS Chr12 26720677 C-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 171746 171750 4
Deletion Chr9 192161 192164 3
Deletion Chr7 284734 284736 2
Deletion Chr8 970328 970349 21
Deletion Chr6 1611167 1611172 5
Deletion Chr4 1942379 1942393 14
Deletion Chr4 2844488 2844506 18
Deletion Chr3 3381891 3381894 3
Deletion Chr7 4476702 4476705 3
Deletion Chr10 8669343 8669508 165
Deletion Chr10 8972238 8972251 13
Deletion Chr12 15692810 15692815 5
Deletion Chr5 16007635 16007637 2
Deletion Chr10 16935614 16935624 10
Deletion Chr9 17092373 17092383 10
Deletion Chr10 18250124 18250138 14
Deletion Chr3 18430263 18430264 1
Deletion Chr1 18647766 18647767 1
Deletion Chr4 19367907 19367911 4
Deletion Chr3 21576723 21576725 2
Deletion Chr4 22017980 22017982 2
Deletion Chr3 22068402 22068409 7
Deletion Chr9 22699549 22699552 3
Deletion Chr11 23431035 23431044 9
Deletion Chr5 23584132 23584138 6 OsKitaake05g205900
Deletion Chr12 27101624 27101629 5 OsKitaake12g228200
Deletion Chr4 32166796 32166799 3
Deletion Chr1 34845859 34845860 1
Deletion Chr1 34913214 34913224 10
Deletion Chr4 35497135 35497138 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 13983035 13983038 2 OsKitaake08g111000
Insertion Chr8 21185141 21185144 2
Insertion Chr9 22214063 22214067 3
Insertion Chr11 3971987 3971991 3
Insertion Chr12 3907260 3907264 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23541848	C-T	Hetero	INTRON
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr2	7914692	A-G	Hetero	INTERGENIC
SBS	Chr2	29006397	A-G	Homo	INTERGENIC
SBS	Chr2	34119897	A-T	Hetero	INTERGENIC
SBS	Chr2	35306805	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	6722079	C-T	Homo	INTERGENIC
SBS	Chr3	14528022	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g189200
SBS	Chr3	20329801	A-G	Homo	INTERGENIC
SBS	Chr4	6083579	C-A	Homo	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	13066209	C-T	Homo	INTERGENIC
SBS	Chr4	16691773	G-A	Homo	INTERGENIC
SBS	Chr4	25311674	G-T	Hetero	INTRON
SBS	Chr4	27612420	T-C	Hetero	INTERGENIC
SBS	Chr4	36683098	T-C	Hetero	INTRON
SBS	Chr4	36683102	G-A	Hetero	INTRON
SBS	Chr4	36905821	A-G	Hetero	INTERGENIC
SBS	Chr5	8933033	T-C	Hetero	INTERGENIC
SBS	Chr5	11967047	C-T	Hetero	INTERGENIC
SBS	Chr5	17285042	C-T	Hetero	INTERGENIC
SBS	Chr5	27313852	G-A	Hetero	INTERGENIC
SBS	Chr6	26441474	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g237500
SBS	Chr7	903160	C-T	Hetero	INTRON
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr7	15791879	T-C	Hetero	INTERGENIC
SBS	Chr8	253585	G-A	Homo	INTRON
SBS	Chr8	4497728	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	11314598	C-T	Homo	INTERGENIC
SBS	Chr9	3607672	T-G	Homo	INTERGENIC
SBS	Chr9	16031676	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g114700
SBS	Chr9	18350366	G-A	Hetero	INTERGENIC
SBS	Chr10	4450727	T-A	Homo	INTERGENIC
SBS	Chr10	4450728	G-T	Homo	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	23799479	T-C	Hetero	INTERGENIC
SBS	Chr11	5911283	G-A	Homo	INTERGENIC
SBS	Chr11	5911284	C-A	Homo	INTERGENIC
SBS	Chr11	22829782	G-A	Hetero	INTERGENIC
SBS	Chr11	23427270	T-A	Homo	INTERGENIC
SBS	Chr11	27056174	C-T	Homo	INTERGENIC
SBS	Chr12	3867811	A-T	Hetero	INTERGENIC
SBS	Chr12	4467705	C-T	Hetero	INTERGENIC
SBS	Chr12	6665329	A-G	Hetero	INTERGENIC
SBS	Chr12	23107126	A-G	Hetero	INTERGENIC
SBS	Chr12	23246489	C-T	Hetero	INTERGENIC
SBS	Chr12	26088776	G-T	Hetero	INTERGENIC
SBS	Chr12	26088778	T-C	Hetero	INTERGENIC
SBS	Chr12	26720677	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	171746	171750	4
Deletion	Chr9	192161	192164	3
Deletion	Chr7	284734	284736	2
Deletion	Chr8	970328	970349	21
Deletion	Chr6	1611167	1611172	5
Deletion	Chr4	1942379	1942393	14
Deletion	Chr4	2844488	2844506	18
Deletion	Chr3	3381891	3381894	3
Deletion	Chr7	4476702	4476705	3
Deletion	Chr10	8669343	8669508	165
Deletion	Chr10	8972238	8972251	13
Deletion	Chr12	15692810	15692815	5
Deletion	Chr5	16007635	16007637	2
Deletion	Chr10	16935614	16935624	10
Deletion	Chr9	17092373	17092383	10
Deletion	Chr10	18250124	18250138	14
Deletion	Chr3	18430263	18430264	1
Deletion	Chr1	18647766	18647767	1
Deletion	Chr4	19367907	19367911	4
Deletion	Chr3	21576723	21576725	2
Deletion	Chr4	22017980	22017982	2
Deletion	Chr3	22068402	22068409	7
Deletion	Chr9	22699549	22699552	3
Deletion	Chr11	23431035	23431044	9
Deletion	Chr5	23584132	23584138	6	OsKitaake05g205900
Deletion	Chr12	27101624	27101629	5	OsKitaake12g228200
Deletion	Chr4	32166796	32166799	3
Deletion	Chr1	34845859	34845860	1
Deletion	Chr1	34913214	34913224	10
Deletion	Chr4	35497135	35497138	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes