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Mutant Information

Mutant Name	FN3187-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3187-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26279 T-A Hetero UTR_5_PRIME
SBS Chr1 9801632 A-G Hetero INTERGENIC
SBS Chr1 22674675 G-A Homo INTERGENIC
SBS Chr1 28763610 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g279200
SBS Chr1 28763611 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g279200
SBS Chr1 29502499 G-T Homo INTERGENIC
SBS Chr2 8640935 A-T Hetero INTERGENIC
SBS Chr2 10867156 G-T Hetero INTERGENIC
SBS Chr2 20305923 T-G Hetero INTERGENIC
SBS Chr2 24286094 C-T Hetero INTERGENIC
SBS Chr2 24823786 T-C Hetero UTR_3_PRIME
SBS Chr2 36663023 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g390800
SBS Chr3 18023251 T-A Hetero UTR_5_PRIME
SBS Chr4 13754749 G-T Homo INTERGENIC
SBS Chr4 14564022 C-G Homo INTERGENIC
SBS Chr4 14908611 G-A Homo INTERGENIC
SBS Chr4 29911022 G-A Hetero INTERGENIC
SBS Chr4 29911023 G-A Hetero INTERGENIC
SBS Chr5 8906222 G-T Hetero INTERGENIC
SBS Chr5 20610674 T-A Hetero INTERGENIC
SBS Chr5 20916175 C-T Hetero INTERGENIC
SBS Chr6 164365 C-T Homo INTRON
SBS Chr7 14423620 G-A Hetero INTERGENIC
SBS Chr7 26899856 A-T Hetero INTERGENIC
SBS Chr7 27556548 C-A Hetero INTERGENIC
SBS Chr8 9744012 C-T Homo INTERGENIC
SBS Chr8 13472321 G-A Hetero INTERGENIC
SBS Chr8 13725520 C-T Homo INTERGENIC
SBS Chr8 13725531 T-G Homo INTERGENIC
SBS Chr8 27668211 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g231500
SBS Chr9 9393882 C-T Hetero INTERGENIC
SBS Chr9 9941423 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g060400
SBS Chr10 8009930 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g050500
SBS Chr11 2490738 G-A Hetero INTRON
SBS Chr11 16882246 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g132701
SBS Chr11 28471417 G-T Homo INTERGENIC
SBS Chr12 3134738 G-A Hetero INTERGENIC
SBS Chr12 9292875 C-G Hetero INTERGENIC
SBS Chr12 19915265 A-T Hetero INTERGENIC
SBS Chr12 24169765 G-A Hetero SYNONYMOUS_CODING

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1870791 1870792 1 OsKitaake10g014200
Deletion Chr3 2369229 2369230 1
Deletion Chr2 2386485 2386492 7
Deletion Chr12 2512598 2512602 4
Deletion Chr1 3019772 3019775 3
Deletion Chr1 5839037 5839038 1
Deletion Chr6 7037916 7037927 11
Deletion Chr1 8972679 8972681 2
Deletion Chr7 13724001 13730000 5999
Deletion Chr2 18188001 18246000 57999 7
Deletion Chr10 21501417 21501441 24
Deletion Chr12 26356014 26356021 7
Deletion Chr7 27673627 27673628 1
Deletion Chr3 33834073 33834078 5 OsKitaake03g364500

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6560220 6560222 1
Insertion Chr1 10343054 10343060 5
Insertion Chr3 3070333 3070336 2
Insertion Chr3 17560051 17560054 2
Insertion Chr4 35892523 35892528 4
Insertion Chr5 25147119 25147122 2
Insertion Chr10 354263 354268 4
Insertion Chr10 1355202 1355205 2
Insertion Chr12 4918134 4918141 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 11371952 12126570
Inversion Chr12 11371965 12126579
Inversion Chr8 13728811 13864377
Inversion Chr8 13749289 13864446

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26279	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	9801632	A-G	Hetero	INTERGENIC
SBS	Chr1	22674675	G-A	Homo	INTERGENIC
SBS	Chr1	28763610	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g279200
SBS	Chr1	28763611	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g279200
SBS	Chr1	29502499	G-T	Homo	INTERGENIC
SBS	Chr2	8640935	A-T	Hetero	INTERGENIC
SBS	Chr2	10867156	G-T	Hetero	INTERGENIC
SBS	Chr2	20305923	T-G	Hetero	INTERGENIC
SBS	Chr2	24286094	C-T	Hetero	INTERGENIC
SBS	Chr2	24823786	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	36663023	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g390800
SBS	Chr3	18023251	T-A	Hetero	UTR_5_PRIME
SBS	Chr4	13754749	G-T	Homo	INTERGENIC
SBS	Chr4	14564022	C-G	Homo	INTERGENIC
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	29911022	G-A	Hetero	INTERGENIC
SBS	Chr4	29911023	G-A	Hetero	INTERGENIC
SBS	Chr5	8906222	G-T	Hetero	INTERGENIC
SBS	Chr5	20610674	T-A	Hetero	INTERGENIC
SBS	Chr5	20916175	C-T	Hetero	INTERGENIC
SBS	Chr6	164365	C-T	Homo	INTRON
SBS	Chr7	14423620	G-A	Hetero	INTERGENIC
SBS	Chr7	26899856	A-T	Hetero	INTERGENIC
SBS	Chr7	27556548	C-A	Hetero	INTERGENIC
SBS	Chr8	9744012	C-T	Homo	INTERGENIC
SBS	Chr8	13472321	G-A	Hetero	INTERGENIC
SBS	Chr8	13725520	C-T	Homo	INTERGENIC
SBS	Chr8	13725531	T-G	Homo	INTERGENIC
SBS	Chr8	27668211	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g231500
SBS	Chr9	9393882	C-T	Hetero	INTERGENIC
SBS	Chr9	9941423	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g060400
SBS	Chr10	8009930	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g050500
SBS	Chr11	2490738	G-A	Hetero	INTRON
SBS	Chr11	16882246	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g132701
SBS	Chr11	28471417	G-T	Homo	INTERGENIC
SBS	Chr12	3134738	G-A	Hetero	INTERGENIC
SBS	Chr12	9292875	C-G	Hetero	INTERGENIC
SBS	Chr12	19915265	A-T	Hetero	INTERGENIC
SBS	Chr12	24169765	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1870791	1870792	1	OsKitaake10g014200
Deletion	Chr3	2369229	2369230	1
Deletion	Chr2	2386485	2386492	7
Deletion	Chr12	2512598	2512602	4
Deletion	Chr1	3019772	3019775	3
Deletion	Chr1	5839037	5839038	1
Deletion	Chr6	7037916	7037927	11
Deletion	Chr1	8972679	8972681	2
Deletion	Chr7	13724001	13730000	5999
Deletion	Chr2	18188001	18246000	57999	7
Deletion	Chr10	21501417	21501441	24
Deletion	Chr12	26356014	26356021	7
Deletion	Chr7	27673627	27673628	1
Deletion	Chr3	33834073	33834078	5	OsKitaake03g364500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11371952	12126570
Inversion	Chr12	11371965	12126579
Inversion	Chr8	13728811	13864377
Inversion	Chr8	13749289	13864446

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes