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Mutant Information

Mutant Name	FN3189-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3189-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3069328 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g038700
SBS Chr1 3069329 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g038700
SBS Chr1 9351269 G-A Hetero INTRON
SBS Chr1 34971892 T-G Hetero UTR_3_PRIME
SBS Chr1 37128431 A-T Hetero INTERGENIC
SBS Chr1 37128433 T-G Hetero INTERGENIC
SBS Chr2 10797923 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g126500
SBS Chr2 12014036 G-C Hetero INTERGENIC
SBS Chr2 17575991 C-T Hetero INTERGENIC
SBS Chr2 25997393 A-T Hetero SYNONYMOUS_CODING
SBS Chr2 25998526 G-C Hetero INTERGENIC
SBS Chr2 27605352 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 9246508 T-C Hetero INTERGENIC
SBS Chr3 11690240 T-C Hetero INTERGENIC
SBS Chr4 1406648 T-A Hetero INTERGENIC
SBS Chr4 6856242 C-A Hetero INTERGENIC
SBS Chr4 7729499 C-G Hetero INTERGENIC
SBS Chr4 11422323 C-T Hetero INTERGENIC
SBS Chr4 18059261 A-G Hetero INTERGENIC
SBS Chr4 19716009 C-T Hetero INTERGENIC
SBS Chr4 21939287 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g127200
SBS Chr4 34418122 C-T Hetero INTERGENIC
SBS Chr4 36825043 G-T Hetero STOP_GAINED OsKitaake04g321100
SBS Chr5 22943017 C-G Hetero INTERGENIC
SBS Chr5 25447162 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 6326575 T-G Hetero INTERGENIC
SBS Chr6 7960597 A-G Hetero INTERGENIC
SBS Chr6 12216690 G-T Hetero INTERGENIC
SBS Chr7 3158633 T-A Hetero INTERGENIC
SBS Chr7 5642060 T-A Hetero INTRON
SBS Chr7 7401775 C-T Hetero INTERGENIC
SBS Chr7 13956923 A-G Hetero INTERGENIC
SBS Chr7 14729196 C-G Hetero INTERGENIC
SBS Chr7 26320526 T-A Hetero UTR_3_PRIME
SBS Chr8 1271876 C-A Hetero INTERGENIC
SBS Chr8 10112480 C-A Hetero INTERGENIC
SBS Chr8 12595468 A-G Hetero INTERGENIC
SBS Chr9 5483024 T-C Hetero INTERGENIC
SBS Chr9 6089744 C-T Hetero INTERGENIC
SBS Chr9 15082427 C-T Hetero INTERGENIC
SBS Chr9 15086568 T-A Hetero INTERGENIC
SBS Chr10 1971004 C-T Hetero INTERGENIC
SBS Chr10 6448210 T-A Hetero INTERGENIC
SBS Chr10 7930202 T-C Hetero INTERGENIC
SBS Chr10 16011337 G-A Hetero INTERGENIC
SBS Chr11 6827772 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 7614565 7614567 2 OsKitaake05g076200
Deletion Chr6 7739407 7739414 7
Deletion Chr8 11498001 11610000 111999 7
Deletion Chr2 17168001 17190000 21999
Deletion Chr9 17554997 17555003 6
Deletion Chr3 20061001 20305000 243999 4
Deletion Chr4 24870265 24870274 9 OsKitaake04g165000
Deletion Chr2 25973812 25973813 1
Deletion Chr1 31140244 31140249 5
Deletion Chr1 40147001 40162000 14999

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 33561235 33561238 2
Insertion Chr4 13149278 13149281 2
Insertion Chr6 609658 609661 2
Insertion Chr10 2987395 2987401 5
Insertion Chr11 23329670 23329673 2
Insertion Chr12 17970509 17970512 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 16608131 16993053
Inversion Chr2 16994860 17188116

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3069328	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g038700
SBS	Chr1	3069329	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g038700
SBS	Chr1	9351269	G-A	Hetero	INTRON
SBS	Chr1	34971892	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	37128431	A-T	Hetero	INTERGENIC
SBS	Chr1	37128433	T-G	Hetero	INTERGENIC
SBS	Chr2	10797923	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g126500
SBS	Chr2	12014036	G-C	Hetero	INTERGENIC
SBS	Chr2	17575991	C-T	Hetero	INTERGENIC
SBS	Chr2	25997393	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	25998526	G-C	Hetero	INTERGENIC
SBS	Chr2	27605352	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9246508	T-C	Hetero	INTERGENIC
SBS	Chr3	11690240	T-C	Hetero	INTERGENIC
SBS	Chr4	1406648	T-A	Hetero	INTERGENIC
SBS	Chr4	6856242	C-A	Hetero	INTERGENIC
SBS	Chr4	7729499	C-G	Hetero	INTERGENIC
SBS	Chr4	11422323	C-T	Hetero	INTERGENIC
SBS	Chr4	18059261	A-G	Hetero	INTERGENIC
SBS	Chr4	19716009	C-T	Hetero	INTERGENIC
SBS	Chr4	21939287	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g127200
SBS	Chr4	34418122	C-T	Hetero	INTERGENIC
SBS	Chr4	36825043	G-T	Hetero	STOP_GAINED	OsKitaake04g321100
SBS	Chr5	22943017	C-G	Hetero	INTERGENIC
SBS	Chr5	25447162	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	6326575	T-G	Hetero	INTERGENIC
SBS	Chr6	7960597	A-G	Hetero	INTERGENIC
SBS	Chr6	12216690	G-T	Hetero	INTERGENIC
SBS	Chr7	3158633	T-A	Hetero	INTERGENIC
SBS	Chr7	5642060	T-A	Hetero	INTRON
SBS	Chr7	7401775	C-T	Hetero	INTERGENIC
SBS	Chr7	13956923	A-G	Hetero	INTERGENIC
SBS	Chr7	14729196	C-G	Hetero	INTERGENIC
SBS	Chr7	26320526	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	1271876	C-A	Hetero	INTERGENIC
SBS	Chr8	10112480	C-A	Hetero	INTERGENIC
SBS	Chr8	12595468	A-G	Hetero	INTERGENIC
SBS	Chr9	5483024	T-C	Hetero	INTERGENIC
SBS	Chr9	6089744	C-T	Hetero	INTERGENIC
SBS	Chr9	15082427	C-T	Hetero	INTERGENIC
SBS	Chr9	15086568	T-A	Hetero	INTERGENIC
SBS	Chr10	1971004	C-T	Hetero	INTERGENIC
SBS	Chr10	6448210	T-A	Hetero	INTERGENIC
SBS	Chr10	7930202	T-C	Hetero	INTERGENIC
SBS	Chr10	16011337	G-A	Hetero	INTERGENIC
SBS	Chr11	6827772	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	7614565	7614567	2	OsKitaake05g076200
Deletion	Chr6	7739407	7739414	7
Deletion	Chr8	11498001	11610000	111999	7
Deletion	Chr2	17168001	17190000	21999
Deletion	Chr9	17554997	17555003	6
Deletion	Chr3	20061001	20305000	243999	4
Deletion	Chr4	24870265	24870274	9	OsKitaake04g165000
Deletion	Chr2	25973812	25973813	1
Deletion	Chr1	31140244	31140249	5
Deletion	Chr1	40147001	40162000	14999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	16608131	16993053
Inversion	Chr2	16994860	17188116

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes