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Mutant Information

Mutant Name	FN319-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN319-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7122891 C-T Homo INTERGENIC
SBS Chr1 18258961 T-C Homo INTERGENIC
SBS Chr1 34914799 G-T Hetero INTERGENIC
SBS Chr2 10845620 C-T Homo INTERGENIC
SBS Chr2 10845621 C-T Homo INTERGENIC
SBS Chr2 25937893 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g255800
SBS Chr2 26743462 T-A Homo INTERGENIC
SBS Chr3 25674411 A-G Hetero INTERGENIC
SBS Chr4 153005 G-A Homo INTERGENIC
SBS Chr4 14781468 G-A Hetero INTERGENIC
SBS Chr4 34745596 G-A Hetero INTERGENIC
SBS Chr5 7014655 G-A Homo INTRON
SBS Chr5 15594897 G-A Hetero INTERGENIC
SBS Chr6 5396843 A-G Hetero INTERGENIC
SBS Chr6 5640643 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g074600
SBS Chr6 17086669 G-A Homo INTERGENIC
SBS Chr7 7821480 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g086000
SBS Chr7 8629322 A-G Hetero INTERGENIC
SBS Chr7 9246014 C-T Hetero INTERGENIC
SBS Chr7 13845920 C-T Homo INTERGENIC
SBS Chr7 28734478 A-C Homo INTERGENIC
SBS Chr8 19805673 A-T Hetero INTERGENIC
SBS Chr8 20857633 A-T Hetero INTERGENIC
SBS Chr8 21873927 G-T Homo INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 21533174 C-T Homo INTERGENIC
SBS Chr10 13132292 C-A Hetero INTERGENIC
SBS Chr10 13824260 G-A Homo INTERGENIC
SBS Chr10 16041847 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g106400
SBS Chr11 11818650 C-T Hetero INTERGENIC
SBS Chr12 1084618 C-T Hetero INTERGENIC
SBS Chr12 21983802 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 676873 676875 2
Deletion Chr9 2531153 2531154 1
Deletion Chr1 3660515 3660520 5
Deletion Chr6 6466585 6466587 2
Deletion Chr5 7122796 7122813 17
Deletion Chr4 7408487 7408488 1
Deletion Chr2 13786008 13786014 6
Deletion Chr11 15432925 15432927 2
Deletion Chr7 21442222 21442223 1
Deletion Chr2 31724629 31724630 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39913062 39913065 2
Insertion Chr9 430501 430505 3
Insertion Chr12 6580688 6580691 2
Insertion Chr5 12594783 12594785 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 28960613 Chr1 30478260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7122891	C-T	Homo	INTERGENIC
SBS	Chr1	18258961	T-C	Homo	INTERGENIC
SBS	Chr1	34914799	G-T	Hetero	INTERGENIC
SBS	Chr2	10845620	C-T	Homo	INTERGENIC
SBS	Chr2	10845621	C-T	Homo	INTERGENIC
SBS	Chr2	25937893	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g255800
SBS	Chr2	26743462	T-A	Homo	INTERGENIC
SBS	Chr3	25674411	A-G	Hetero	INTERGENIC
SBS	Chr4	153005	G-A	Homo	INTERGENIC
SBS	Chr4	14781468	G-A	Hetero	INTERGENIC
SBS	Chr4	34745596	G-A	Hetero	INTERGENIC
SBS	Chr5	7014655	G-A	Homo	INTRON
SBS	Chr5	15594897	G-A	Hetero	INTERGENIC
SBS	Chr6	5396843	A-G	Hetero	INTERGENIC
SBS	Chr6	5640643	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g074600
SBS	Chr6	17086669	G-A	Homo	INTERGENIC
SBS	Chr7	7821480	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g086000
SBS	Chr7	8629322	A-G	Hetero	INTERGENIC
SBS	Chr7	9246014	C-T	Hetero	INTERGENIC
SBS	Chr7	13845920	C-T	Homo	INTERGENIC
SBS	Chr7	28734478	A-C	Homo	INTERGENIC
SBS	Chr8	19805673	A-T	Hetero	INTERGENIC
SBS	Chr8	20857633	A-T	Hetero	INTERGENIC
SBS	Chr8	21873927	G-T	Homo	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	21533174	C-T	Homo	INTERGENIC
SBS	Chr10	13132292	C-A	Hetero	INTERGENIC
SBS	Chr10	13824260	G-A	Homo	INTERGENIC
SBS	Chr10	16041847	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g106400
SBS	Chr11	11818650	C-T	Hetero	INTERGENIC
SBS	Chr12	1084618	C-T	Hetero	INTERGENIC
SBS	Chr12	21983802	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	676873	676875	2
Deletion	Chr9	2531153	2531154	1
Deletion	Chr1	3660515	3660520	5
Deletion	Chr6	6466585	6466587	2
Deletion	Chr5	7122796	7122813	17
Deletion	Chr4	7408487	7408488	1
Deletion	Chr2	13786008	13786014	6
Deletion	Chr11	15432925	15432927	2
Deletion	Chr7	21442222	21442223	1
Deletion	Chr2	31724629	31724630	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	28960613	Chr1	30478260

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes