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Mutant Information

Mutant Name	FN3194-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3194-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3948740 T-A Homo INTRON
SBS Chr1 20528703 T-C Hetero INTERGENIC
SBS Chr1 31235089 G-A Homo INTERGENIC
SBS Chr1 34551771 C-T Hetero INTERGENIC
SBS Chr2 617447 C-T Homo INTERGENIC
SBS Chr2 7502476 G-A Hetero INTERGENIC
SBS Chr2 16954026 T-C Hetero INTERGENIC
SBS Chr2 29557039 A-T Hetero INTERGENIC
SBS Chr3 989708 G-T Hetero UTR_3_PRIME
SBS Chr3 5300966 A-G Hetero INTERGENIC
SBS Chr3 10287748 C-T Hetero INTERGENIC
SBS Chr3 20024650 T-G Homo INTERGENIC
SBS Chr3 31903799 A-T Hetero INTERGENIC
SBS Chr4 9617630 G-A Hetero INTERGENIC
SBS Chr4 14565645 G-A Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 13327862 G-A Hetero INTERGENIC
SBS Chr5 24659584 G-T Hetero INTRON
SBS Chr6 116860 T-A Hetero INTERGENIC
SBS Chr6 7226371 C-A Hetero INTERGENIC
SBS Chr6 14480299 G-A Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr7 27177057 T-C Hetero INTERGENIC
SBS Chr8 14427934 T-G Hetero INTERGENIC
SBS Chr9 6113082 C-T Hetero INTERGENIC
SBS Chr9 6679906 C-T Hetero INTERGENIC
SBS Chr9 15566839 G-A Hetero INTERGENIC
SBS Chr9 18105250 G-A Hetero INTERGENIC
SBS Chr11 631377 C-T Homo INTERGENIC
SBS Chr11 2609176 C-T Hetero INTRON
SBS Chr11 12220286 T-C Hetero INTERGENIC
SBS Chr12 21938750 G-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3638088 3638094 6
Deletion Chr2 4024041 4024047 6
Deletion Chr2 6237652 6237654 2
Deletion Chr1 9675651 9675652 1
Deletion Chr11 14625648 14625650 2
Deletion Chr1 14977001 15014000 36999 9
Deletion Chr3 16080001 16086000 5999
Deletion Chr3 16265921 16265922 1
Deletion Chr3 16816001 16852000 35999 OsKitaake03g210800
Deletion Chr3 17155028 17155033 5
Deletion Chr2 19054282 19054283 1
Deletion Chr5 19562721 19562722 1
Deletion Chr9 19986037 19986044 7
Deletion Chr3 20497229 20497231 2
Deletion Chr7 21413575 21413583 8
Deletion Chr6 21587082 21587083 1
Deletion Chr3 26039361 26039367 6
Deletion Chr1 27538497 27538509 12
Deletion Chr1 28075835 28075850 15
Deletion Chr11 28800105 28800109 4
Deletion Chr4 29708110 29708121 11
Deletion Chr6 29788967 29788973 6
Deletion Chr3 37736050 37736052 2 OsKitaake03g424000

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31401378 31401381 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 25264056 26002447 2
Inversion Chr11 25264063 26002455 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3948740	T-A	Homo	INTRON
SBS	Chr1	20528703	T-C	Hetero	INTERGENIC
SBS	Chr1	31235089	G-A	Homo	INTERGENIC
SBS	Chr1	34551771	C-T	Hetero	INTERGENIC
SBS	Chr2	617447	C-T	Homo	INTERGENIC
SBS	Chr2	7502476	G-A	Hetero	INTERGENIC
SBS	Chr2	16954026	T-C	Hetero	INTERGENIC
SBS	Chr2	29557039	A-T	Hetero	INTERGENIC
SBS	Chr3	989708	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	5300966	A-G	Hetero	INTERGENIC
SBS	Chr3	10287748	C-T	Hetero	INTERGENIC
SBS	Chr3	20024650	T-G	Homo	INTERGENIC
SBS	Chr3	31903799	A-T	Hetero	INTERGENIC
SBS	Chr4	9617630	G-A	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	13327862	G-A	Hetero	INTERGENIC
SBS	Chr5	24659584	G-T	Hetero	INTRON
SBS	Chr6	116860	T-A	Hetero	INTERGENIC
SBS	Chr6	7226371	C-A	Hetero	INTERGENIC
SBS	Chr6	14480299	G-A	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr7	27177057	T-C	Hetero	INTERGENIC
SBS	Chr8	14427934	T-G	Hetero	INTERGENIC
SBS	Chr9	6113082	C-T	Hetero	INTERGENIC
SBS	Chr9	6679906	C-T	Hetero	INTERGENIC
SBS	Chr9	15566839	G-A	Hetero	INTERGENIC
SBS	Chr9	18105250	G-A	Hetero	INTERGENIC
SBS	Chr11	631377	C-T	Homo	INTERGENIC
SBS	Chr11	2609176	C-T	Hetero	INTRON
SBS	Chr11	12220286	T-C	Hetero	INTERGENIC
SBS	Chr12	21938750	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3638088	3638094	6
Deletion	Chr2	4024041	4024047	6
Deletion	Chr2	6237652	6237654	2
Deletion	Chr1	9675651	9675652	1
Deletion	Chr11	14625648	14625650	2
Deletion	Chr1	14977001	15014000	36999	9
Deletion	Chr3	16080001	16086000	5999
Deletion	Chr3	16265921	16265922	1
Deletion	Chr3	16816001	16852000	35999	OsKitaake03g210800
Deletion	Chr3	17155028	17155033	5
Deletion	Chr2	19054282	19054283	1
Deletion	Chr5	19562721	19562722	1
Deletion	Chr9	19986037	19986044	7
Deletion	Chr3	20497229	20497231	2
Deletion	Chr7	21413575	21413583	8
Deletion	Chr6	21587082	21587083	1
Deletion	Chr3	26039361	26039367	6
Deletion	Chr1	27538497	27538509	12
Deletion	Chr1	28075835	28075850	15
Deletion	Chr11	28800105	28800109	4
Deletion	Chr4	29708110	29708121	11
Deletion	Chr6	29788967	29788973	6
Deletion	Chr3	37736050	37736052	2	OsKitaake03g424000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25264056	26002447	2
Inversion	Chr11	25264063	26002455	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes