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Mutant Information

Mutant Name	FN3199-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3199-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4186987 G-A Hetero INTERGENIC
SBS Chr1 9069094 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g116600
SBS Chr1 37941150 G-T Hetero INTRON
SBS Chr1 38368454 T-C Hetero INTERGENIC
SBS Chr1 41033396 C-T Hetero INTRON
SBS Chr1 42210093 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 15268620 G-A Hetero INTERGENIC
SBS Chr2 15268623 C-A Hetero INTERGENIC
SBS Chr3 13182438 A-G Hetero INTERGENIC
SBS Chr3 20863891 G-C Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 27372062 G-A Homo INTRON
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 30321046 C-A Hetero INTERGENIC
SBS Chr3 35735847 G-T Hetero UTR_5_PRIME
SBS Chr4 19788287 G-T Homo INTERGENIC
SBS Chr4 20612832 T-C Homo UTR_3_PRIME
SBS Chr4 29941760 A-T Homo INTRON
SBS Chr4 33683354 C-T Hetero INTERGENIC
SBS Chr4 35604377 G-A Hetero INTERGENIC
SBS Chr5 6047027 A-T Hetero INTERGENIC
SBS Chr5 10377238 A-G Homo INTERGENIC
SBS Chr5 22623675 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 25140958 T-G Hetero INTERGENIC
SBS Chr6 5583054 A-T Hetero INTERGENIC
SBS Chr6 15553430 C-T Hetero INTERGENIC
SBS Chr7 29558107 C-T Hetero INTERGENIC
SBS Chr8 5455146 A-G Hetero INTERGENIC
SBS Chr8 9662114 G-T Homo INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 16716481 G-A Homo INTERGENIC
SBS Chr8 27616551 T-A Hetero INTERGENIC
SBS Chr8 28213440 T-G Hetero INTERGENIC
SBS Chr9 10150274 T-C Homo INTERGENIC
SBS Chr10 3291227 C-A Homo INTERGENIC
SBS Chr10 14676052 T-C Hetero INTERGENIC
SBS Chr10 23746365 T-C Hetero INTERGENIC
SBS Chr11 18800147 G-T Homo INTRON
SBS Chr12 12289622 A-G Homo INTERGENIC
SBS Chr12 15708972 A-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5337979 5337982 3 OsKitaake06g071800
Deletion Chr6 5878455 5878457 2
Deletion Chr2 7571001 7758000 186999 17
Deletion Chr9 11049271 11049288 17
Deletion Chr6 12446589 12446590 1
Deletion Chr3 13258289 13258294 5 OsKitaake03g177200
Deletion Chr4 14338366 14338371 5
Deletion Chr2 16630195 16630198 3
Deletion Chr2 16863001 16879000 15999 OsKitaake02g172100
Deletion Chr6 17512112 17512115 3
Deletion Chr6 17847194 17847196 2
Deletion Chr1 18387491 18387502 11
Deletion Chr7 18483583 18483584 1
Deletion Chr4 26081879 26081881 2
Deletion Chr3 26116939 26116940 1
Deletion Chr11 26570453 26570455 2
Deletion Chr3 28052244 28052251 7
Deletion Chr3 34290288 34290290 2 OsKitaake03g371400
Deletion Chr1 35079082 35079084 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33772526 33772528 1
Insertion Chr3 3730005 3730008 2
Insertion Chr8 11655385 11655388 2
Insertion Chr9 19991864 19991869 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 13160727 13184623 OsKitaake03g176100
Inversion Chr3 13163106 13184643 OsKitaake03g176200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5589046 Chr3 25030173 OsKitaake06g074200
Translocation Chr6 5590584 Chr3 25030168 OsKitaake06g074200
Translocation Chr8 13562080 Chr3 20467295 OsKitaake08g110500
Translocation Chr8 13562084 Chr3 20465363 OsKitaake08g110500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4186987	G-A	Hetero	INTERGENIC
SBS	Chr1	9069094	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g116600
SBS	Chr1	37941150	G-T	Hetero	INTRON
SBS	Chr1	38368454	T-C	Hetero	INTERGENIC
SBS	Chr1	41033396	C-T	Hetero	INTRON
SBS	Chr1	42210093	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	15268620	G-A	Hetero	INTERGENIC
SBS	Chr2	15268623	C-A	Hetero	INTERGENIC
SBS	Chr3	13182438	A-G	Hetero	INTERGENIC
SBS	Chr3	20863891	G-C	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	27372062	G-A	Homo	INTRON
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	30321046	C-A	Hetero	INTERGENIC
SBS	Chr3	35735847	G-T	Hetero	UTR_5_PRIME
SBS	Chr4	19788287	G-T	Homo	INTERGENIC
SBS	Chr4	20612832	T-C	Homo	UTR_3_PRIME
SBS	Chr4	29941760	A-T	Homo	INTRON
SBS	Chr4	33683354	C-T	Hetero	INTERGENIC
SBS	Chr4	35604377	G-A	Hetero	INTERGENIC
SBS	Chr5	6047027	A-T	Hetero	INTERGENIC
SBS	Chr5	10377238	A-G	Homo	INTERGENIC
SBS	Chr5	22623675	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	25140958	T-G	Hetero	INTERGENIC
SBS	Chr6	5583054	A-T	Hetero	INTERGENIC
SBS	Chr6	15553430	C-T	Hetero	INTERGENIC
SBS	Chr7	29558107	C-T	Hetero	INTERGENIC
SBS	Chr8	5455146	A-G	Hetero	INTERGENIC
SBS	Chr8	9662114	G-T	Homo	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	16716481	G-A	Homo	INTERGENIC
SBS	Chr8	27616551	T-A	Hetero	INTERGENIC
SBS	Chr8	28213440	T-G	Hetero	INTERGENIC
SBS	Chr9	10150274	T-C	Homo	INTERGENIC
SBS	Chr10	3291227	C-A	Homo	INTERGENIC
SBS	Chr10	14676052	T-C	Hetero	INTERGENIC
SBS	Chr10	23746365	T-C	Hetero	INTERGENIC
SBS	Chr11	18800147	G-T	Homo	INTRON
SBS	Chr12	12289622	A-G	Homo	INTERGENIC
SBS	Chr12	15708972	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5337979	5337982	3	OsKitaake06g071800
Deletion	Chr6	5878455	5878457	2
Deletion	Chr2	7571001	7758000	186999	17
Deletion	Chr9	11049271	11049288	17
Deletion	Chr6	12446589	12446590	1
Deletion	Chr3	13258289	13258294	5	OsKitaake03g177200
Deletion	Chr4	14338366	14338371	5
Deletion	Chr2	16630195	16630198	3
Deletion	Chr2	16863001	16879000	15999	OsKitaake02g172100
Deletion	Chr6	17512112	17512115	3
Deletion	Chr6	17847194	17847196	2
Deletion	Chr1	18387491	18387502	11
Deletion	Chr7	18483583	18483584	1
Deletion	Chr4	26081879	26081881	2
Deletion	Chr3	26116939	26116940	1
Deletion	Chr11	26570453	26570455	2
Deletion	Chr3	28052244	28052251	7
Deletion	Chr3	34290288	34290290	2	OsKitaake03g371400
Deletion	Chr1	35079082	35079084	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13160727	13184623	OsKitaake03g176100
Inversion	Chr3	13163106	13184643	OsKitaake03g176200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes