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Mutant Information

Mutant Name	FN320-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN320-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7223201 T-C Hetero INTERGENIC
SBS Chr1 38623164 T-G Homo UTR_3_PRIME
SBS Chr2 9327542 C-T Hetero INTERGENIC
SBS Chr2 22256735 T-C Hetero INTERGENIC
SBS Chr3 5321387 A-T Hetero INTERGENIC
SBS Chr3 8326388 C-T Homo INTERGENIC
SBS Chr3 20459533 C-A Hetero INTERGENIC
SBS Chr3 26219759 G-A Hetero INTERGENIC
SBS Chr4 628184 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g004900
SBS Chr4 4714997 T-A Homo INTERGENIC
SBS Chr4 10691886 C-T Hetero INTERGENIC
SBS Chr4 11936095 C-T Homo INTERGENIC
SBS Chr4 14499236 G-A Hetero INTERGENIC
SBS Chr5 1855939 C-T Hetero INTERGENIC
SBS Chr5 5509627 T-G Hetero INTERGENIC
SBS Chr5 17085578 A-G Hetero INTRON
SBS Chr5 22750787 C-T Hetero UTR_5_PRIME
SBS Chr5 28590142 A-G Hetero INTRON
SBS Chr6 23632605 T-A Hetero INTERGENIC
SBS Chr6 28226665 T-C Homo UTR_5_PRIME
SBS Chr7 913434 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g011600
SBS Chr7 4349054 G-A Hetero INTERGENIC
SBS Chr8 10240131 A-T Homo INTERGENIC
SBS Chr9 7074138 T-A Hetero INTRON
SBS Chr9 22316910 A-T Homo INTERGENIC
SBS Chr10 5593119 G-A Hetero INTERGENIC
SBS Chr10 6303469 A-C Hetero INTERGENIC
SBS Chr10 11229845 C-T Hetero INTERGENIC
SBS Chr10 16420377 G-A Hetero INTERGENIC
SBS Chr11 25361345 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 17364742 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 943137 943138 1
Deletion Chr10 1362737 1362738 1
Deletion Chr4 5506726 5506735 9
Deletion Chr11 7414991 7414992 1
Deletion Chr3 11252686 11252687 1
Deletion Chr12 11718228 11718702 474
Deletion Chr8 15020151 15020152 1
Deletion Chr9 18259001 18564000 304999 47
Deletion Chr3 18338077 18338088 11
Deletion Chr3 19157137 19157138 1
Deletion Chr3 19194711 19194714 3
Deletion Chr7 21338574 21338582 8
Deletion Chr8 22477001 22514000 36999 7
Deletion Chr3 24105469 24105471 2
Deletion Chr5 29860940 29860941 1
Deletion Chr1 37074894 37074908 14

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29314955 29314958 2
Insertion Chr6 20898957 20898960 2
Insertion Chr6 30090427 30090432 4
Insertion Chr1 23284336 23284340 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 21538443 22255719 OsKitaake02g208300
Inversion Chr2 21538479 22255733 OsKitaake02g208300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11842681 Chr8 18835175 OsKitaake08g139600
Translocation Chr9 11843249 Chr8 18835163 OsKitaake08g139600
Translocation Chr11 18113441 Chr9 502322

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7223201	T-C	Hetero	INTERGENIC
SBS	Chr1	38623164	T-G	Homo	UTR_3_PRIME
SBS	Chr2	9327542	C-T	Hetero	INTERGENIC
SBS	Chr2	22256735	T-C	Hetero	INTERGENIC
SBS	Chr3	5321387	A-T	Hetero	INTERGENIC
SBS	Chr3	8326388	C-T	Homo	INTERGENIC
SBS	Chr3	20459533	C-A	Hetero	INTERGENIC
SBS	Chr3	26219759	G-A	Hetero	INTERGENIC
SBS	Chr4	628184	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g004900
SBS	Chr4	4714997	T-A	Homo	INTERGENIC
SBS	Chr4	10691886	C-T	Hetero	INTERGENIC
SBS	Chr4	11936095	C-T	Homo	INTERGENIC
SBS	Chr4	14499236	G-A	Hetero	INTERGENIC
SBS	Chr5	1855939	C-T	Hetero	INTERGENIC
SBS	Chr5	5509627	T-G	Hetero	INTERGENIC
SBS	Chr5	17085578	A-G	Hetero	INTRON
SBS	Chr5	22750787	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	28590142	A-G	Hetero	INTRON
SBS	Chr6	23632605	T-A	Hetero	INTERGENIC
SBS	Chr6	28226665	T-C	Homo	UTR_5_PRIME
SBS	Chr7	913434	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g011600
SBS	Chr7	4349054	G-A	Hetero	INTERGENIC
SBS	Chr8	10240131	A-T	Homo	INTERGENIC
SBS	Chr9	7074138	T-A	Hetero	INTRON
SBS	Chr9	22316910	A-T	Homo	INTERGENIC
SBS	Chr10	5593119	G-A	Hetero	INTERGENIC
SBS	Chr10	6303469	A-C	Hetero	INTERGENIC
SBS	Chr10	11229845	C-T	Hetero	INTERGENIC
SBS	Chr10	16420377	G-A	Hetero	INTERGENIC
SBS	Chr11	25361345	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	17364742	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	943137	943138	1
Deletion	Chr10	1362737	1362738	1
Deletion	Chr4	5506726	5506735	9
Deletion	Chr11	7414991	7414992	1
Deletion	Chr3	11252686	11252687	1
Deletion	Chr12	11718228	11718702	474
Deletion	Chr8	15020151	15020152	1
Deletion	Chr9	18259001	18564000	304999	47
Deletion	Chr3	18338077	18338088	11
Deletion	Chr3	19157137	19157138	1
Deletion	Chr3	19194711	19194714	3
Deletion	Chr7	21338574	21338582	8
Deletion	Chr8	22477001	22514000	36999	7
Deletion	Chr3	24105469	24105471	2
Deletion	Chr5	29860940	29860941	1
Deletion	Chr1	37074894	37074908	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21538443	22255719	OsKitaake02g208300
Inversion	Chr2	21538479	22255733	OsKitaake02g208300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes