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Mutant Information

Mutant Name	FN3200-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3200-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3667563 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g049100
SBS Chr1 3667564 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g049100
SBS Chr1 6281976 C-A Homo INTERGENIC
SBS Chr1 8958538 G-A Hetero INTERGENIC
SBS Chr1 10695110 A-G Hetero INTERGENIC
SBS Chr1 13925597 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 15221387 C-A Hetero INTERGENIC
SBS Chr1 16147068 A-T Hetero INTERGENIC
SBS Chr1 38057048 C-T Homo INTERGENIC
SBS Chr2 2020057 G-A Hetero INTERGENIC
SBS Chr2 10531670 A-G Hetero INTRON
SBS Chr2 15112558 T-C Hetero INTERGENIC
SBS Chr2 28394012 A-C Homo INTERGENIC
SBS Chr2 35109912 C-T Hetero INTRON
SBS Chr2 36734956 T-C Hetero UTR_3_PRIME
SBS Chr3 10826527 C-T Hetero INTERGENIC
SBS Chr3 12957364 A-C Hetero INTERGENIC
SBS Chr3 12957365 A-G Hetero INTERGENIC
SBS Chr3 36174416 C-T Hetero INTERGENIC
SBS Chr4 5253338 A-C Hetero INTERGENIC
SBS Chr4 5413101 A-T Hetero INTERGENIC
SBS Chr4 9117242 C-T Hetero INTERGENIC
SBS Chr4 10935347 G-A Homo INTERGENIC
SBS Chr4 14787977 C-A Hetero INTERGENIC
SBS Chr4 16306730 C-G Hetero INTERGENIC
SBS Chr4 34580150 C-T Hetero INTERGENIC
SBS Chr4 36490797 T-A Hetero INTERGENIC
SBS Chr5 2606182 T-A Hetero UTR_3_PRIME
SBS Chr5 16548474 C-A Hetero INTERGENIC
SBS Chr5 18229182 A-G Hetero UTR_3_PRIME
SBS Chr5 18308766 T-C Hetero INTERGENIC
SBS Chr5 21671870 C-T Hetero INTERGENIC
SBS Chr6 3502635 C-T Hetero INTERGENIC
SBS Chr6 17086669 G-A Homo INTERGENIC
SBS Chr6 23474537 G-A Hetero INTERGENIC
SBS Chr6 28075564 A-G Hetero START_GAINED
SBS Chr7 23350067 A-C Homo UTR_5_PRIME
SBS Chr8 4192161 C-A Hetero INTERGENIC
SBS Chr8 13061371 T-A Homo INTERGENIC
SBS Chr8 21873927 G-T Homo INTERGENIC
SBS Chr8 22687720 G-C Hetero INTERGENIC
SBS Chr9 5250604 C-T Hetero INTERGENIC
SBS Chr9 5310708 G-T Hetero INTERGENIC
SBS Chr9 5310709 A-T Hetero INTERGENIC
SBS Chr9 19717240 G-T Homo INTERGENIC
SBS Chr10 4880878 G-A Hetero INTERGENIC
SBS Chr10 8401139 T-G Hetero INTERGENIC
SBS Chr10 13086131 G-A Hetero INTERGENIC
SBS Chr10 16512012 G-T Homo INTRON
SBS Chr10 20453392 G-A Homo INTRON
SBS Chr10 20494397 C-T Hetero INTRON
SBS Chr12 2588939 C-T Homo INTERGENIC
SBS Chr12 14100766 T-A Hetero INTERGENIC
SBS Chr12 24705292 T-C Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1432884 1432888 4
Deletion Chr2 4778929 4778930 1
Deletion Chr9 5629864 5629865 1
Deletion Chr2 7404582 7404584 2 OsKitaake02g098700
Deletion Chr7 8358946 8358947 1
Deletion Chr8 13063001 13100000 36999
Deletion Chr8 22918201 22918221 20
Deletion Chr7 23723019 23723021 2
Deletion Chr12 26751856 26751866 10
Deletion Chr1 30379860 30379869 9
Deletion Chr4 32970851 32970853 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39913062 39913065 2
Insertion Chr8 24258032 24258037 4
Insertion Chr9 8756621 8756624 2
Insertion Chr5 12633210 12633212 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 33452064 34428144 OsKitaake02g358000
Inversion Chr2 33452082 34428174 OsKitaake02g358000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23486893 Chr8 25062109 OsKitaake08g194300
Translocation Chr11 23486897 Chr8 25062111 OsKitaake08g194300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3667563	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g049100
SBS	Chr1	3667564	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g049100
SBS	Chr1	6281976	C-A	Homo	INTERGENIC
SBS	Chr1	8958538	G-A	Hetero	INTERGENIC
SBS	Chr1	10695110	A-G	Hetero	INTERGENIC
SBS	Chr1	13925597	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	15221387	C-A	Hetero	INTERGENIC
SBS	Chr1	16147068	A-T	Hetero	INTERGENIC
SBS	Chr1	38057048	C-T	Homo	INTERGENIC
SBS	Chr2	2020057	G-A	Hetero	INTERGENIC
SBS	Chr2	10531670	A-G	Hetero	INTRON
SBS	Chr2	15112558	T-C	Hetero	INTERGENIC
SBS	Chr2	28394012	A-C	Homo	INTERGENIC
SBS	Chr2	35109912	C-T	Hetero	INTRON
SBS	Chr2	36734956	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	10826527	C-T	Hetero	INTERGENIC
SBS	Chr3	12957364	A-C	Hetero	INTERGENIC
SBS	Chr3	12957365	A-G	Hetero	INTERGENIC
SBS	Chr3	36174416	C-T	Hetero	INTERGENIC
SBS	Chr4	5253338	A-C	Hetero	INTERGENIC
SBS	Chr4	5413101	A-T	Hetero	INTERGENIC
SBS	Chr4	9117242	C-T	Hetero	INTERGENIC
SBS	Chr4	10935347	G-A	Homo	INTERGENIC
SBS	Chr4	14787977	C-A	Hetero	INTERGENIC
SBS	Chr4	16306730	C-G	Hetero	INTERGENIC
SBS	Chr4	34580150	C-T	Hetero	INTERGENIC
SBS	Chr4	36490797	T-A	Hetero	INTERGENIC
SBS	Chr5	2606182	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	16548474	C-A	Hetero	INTERGENIC
SBS	Chr5	18229182	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	18308766	T-C	Hetero	INTERGENIC
SBS	Chr5	21671870	C-T	Hetero	INTERGENIC
SBS	Chr6	3502635	C-T	Hetero	INTERGENIC
SBS	Chr6	17086669	G-A	Homo	INTERGENIC
SBS	Chr6	23474537	G-A	Hetero	INTERGENIC
SBS	Chr6	28075564	A-G	Hetero	START_GAINED
SBS	Chr7	23350067	A-C	Homo	UTR_5_PRIME
SBS	Chr8	4192161	C-A	Hetero	INTERGENIC
SBS	Chr8	13061371	T-A	Homo	INTERGENIC
SBS	Chr8	21873927	G-T	Homo	INTERGENIC
SBS	Chr8	22687720	G-C	Hetero	INTERGENIC
SBS	Chr9	5250604	C-T	Hetero	INTERGENIC
SBS	Chr9	5310708	G-T	Hetero	INTERGENIC
SBS	Chr9	5310709	A-T	Hetero	INTERGENIC
SBS	Chr9	19717240	G-T	Homo	INTERGENIC
SBS	Chr10	4880878	G-A	Hetero	INTERGENIC
SBS	Chr10	8401139	T-G	Hetero	INTERGENIC
SBS	Chr10	13086131	G-A	Hetero	INTERGENIC
SBS	Chr10	16512012	G-T	Homo	INTRON
SBS	Chr10	20453392	G-A	Homo	INTRON
SBS	Chr10	20494397	C-T	Hetero	INTRON
SBS	Chr12	2588939	C-T	Homo	INTERGENIC
SBS	Chr12	14100766	T-A	Hetero	INTERGENIC
SBS	Chr12	24705292	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1432884	1432888	4
Deletion	Chr2	4778929	4778930	1
Deletion	Chr9	5629864	5629865	1
Deletion	Chr2	7404582	7404584	2	OsKitaake02g098700
Deletion	Chr7	8358946	8358947	1
Deletion	Chr8	13063001	13100000	36999
Deletion	Chr8	22918201	22918221	20
Deletion	Chr7	23723019	23723021	2
Deletion	Chr12	26751856	26751866	10
Deletion	Chr1	30379860	30379869	9
Deletion	Chr4	32970851	32970853	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	33452064	34428144	OsKitaake02g358000
Inversion	Chr2	33452082	34428174	OsKitaake02g358000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes