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Mutant Information

Mutant Name	FN3201-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3201-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7466231 T-C Hetero INTRON
SBS Chr1 21330362 A-G Hetero INTRON
SBS Chr1 22104075 C-T Hetero INTERGENIC
SBS Chr1 34712795 C-T Homo INTERGENIC
SBS Chr1 40906766 A-C Hetero INTERGENIC
SBS Chr1 44019083 T-C Hetero INTRON
SBS Chr2 23492790 C-A Hetero INTERGENIC
SBS Chr2 34563161 C-A Hetero INTERGENIC
SBS Chr3 4792784 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g069200
SBS Chr3 20091853 C-T Hetero INTERGENIC
SBS Chr3 24291814 C-A Hetero INTERGENIC
SBS Chr3 34429636 C-A Homo INTERGENIC
SBS Chr4 2270950 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 3494125 C-T Hetero INTERGENIC
SBS Chr4 7977807 G-A Hetero UTR_3_PRIME
SBS Chr4 15608251 C-G Hetero INTERGENIC
SBS Chr4 25232637 A-T Hetero INTERGENIC
SBS Chr4 31777277 C-G Hetero INTERGENIC
SBS Chr4 35675441 A-T Hetero INTERGENIC
SBS Chr5 4742334 C-G Hetero INTERGENIC
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr5 28464783 T-G Hetero INTRON
SBS Chr6 1974618 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 3763994 C-T Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 25950899 C-T Hetero INTERGENIC
SBS Chr7 6969373 T-C Hetero INTERGENIC
SBS Chr7 8554886 A-G Hetero INTERGENIC
SBS Chr7 18627375 T-C Hetero INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 19690498 C-G Hetero INTERGENIC
SBS Chr8 13864363 C-G Hetero INTERGENIC
SBS Chr9 1756256 T-G Homo NON_SYNONYMOUS_CODING OsKitaake09g009700
SBS Chr9 1919472 C-T Homo INTERGENIC
SBS Chr9 2457261 A-G Hetero INTRON
SBS Chr9 5689146 A-C Homo NON_SYNONYMOUS_CODING OsKitaake09g032300
SBS Chr9 14297599 G-T Homo INTERGENIC
SBS Chr9 18449831 C-T Hetero INTERGENIC
SBS Chr9 21331884 C-A Hetero INTRON
SBS Chr10 8326508 A-T Hetero START_GAINED
SBS Chr10 9271589 T-A Hetero INTERGENIC
SBS Chr10 13139608 C-T Hetero INTERGENIC
SBS Chr10 15906225 T-A Hetero INTERGENIC
SBS Chr11 6298952 G-A Hetero INTERGENIC
SBS Chr11 10405418 A-T Homo NON_SYNONYMOUS_CODING OsKitaake11g104100
SBS Chr11 14528117 T-A Homo INTERGENIC
SBS Chr11 23083315 C-A Hetero INTERGENIC
SBS Chr11 23083316 T-A Hetero INTERGENIC
SBS Chr11 25606224 C-T Homo INTERGENIC
SBS Chr11 25606225 C-T Homo INTERGENIC
SBS Chr11 27337073 T-A Hetero INTERGENIC
SBS Chr12 3640443 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g050700
SBS Chr12 19817227 C-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1501747 1501752 5
Deletion Chr11 2484755 2484762 7
Deletion Chr9 5569472 5569473 1
Deletion Chr11 5578657 5578663 6
Deletion Chr2 9323333 9323334 1
Deletion Chr9 17651726 17651730 4
Deletion Chr10 21296756 21296759 3 OsKitaake10g168100
Deletion Chr7 21336490 21336492 2
Deletion Chr11 23898183 23898185 2
Deletion Chr2 29670107 29670110 3
Deletion Chr2 31702089 31702094 5
Deletion Chr2 33753559 33753561 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17307703 17307706 2
Insertion Chr5 15049803 15049805 1
Insertion Chr7 8468084 8468087 2
Insertion Chr2 14390888 14390890 1 OsKitaake02g155775

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1759917 1919180 OsKitaake09g009700
Inversion Chr9 1761225 1919179

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1759929 Chr3 20328928 OsKitaake09g009700
Translocation Chr9 1761220 Chr6 26094701
Translocation Chr12 21500376 Chr4 18617091
Translocation Chr6 26094695 Chr3 20329285

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7466231	T-C	Hetero	INTRON
SBS	Chr1	21330362	A-G	Hetero	INTRON
SBS	Chr1	22104075	C-T	Hetero	INTERGENIC
SBS	Chr1	34712795	C-T	Homo	INTERGENIC
SBS	Chr1	40906766	A-C	Hetero	INTERGENIC
SBS	Chr1	44019083	T-C	Hetero	INTRON
SBS	Chr2	23492790	C-A	Hetero	INTERGENIC
SBS	Chr2	34563161	C-A	Hetero	INTERGENIC
SBS	Chr3	4792784	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g069200
SBS	Chr3	20091853	C-T	Hetero	INTERGENIC
SBS	Chr3	24291814	C-A	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Homo	INTERGENIC
SBS	Chr4	2270950	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	3494125	C-T	Hetero	INTERGENIC
SBS	Chr4	7977807	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	15608251	C-G	Hetero	INTERGENIC
SBS	Chr4	25232637	A-T	Hetero	INTERGENIC
SBS	Chr4	31777277	C-G	Hetero	INTERGENIC
SBS	Chr4	35675441	A-T	Hetero	INTERGENIC
SBS	Chr5	4742334	C-G	Hetero	INTERGENIC
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr5	28464783	T-G	Hetero	INTRON
SBS	Chr6	1974618	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	3763994	C-T	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	25950899	C-T	Hetero	INTERGENIC
SBS	Chr7	6969373	T-C	Hetero	INTERGENIC
SBS	Chr7	8554886	A-G	Hetero	INTERGENIC
SBS	Chr7	18627375	T-C	Hetero	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	19690498	C-G	Hetero	INTERGENIC
SBS	Chr8	13864363	C-G	Hetero	INTERGENIC
SBS	Chr9	1756256	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g009700
SBS	Chr9	1919472	C-T	Homo	INTERGENIC
SBS	Chr9	2457261	A-G	Hetero	INTRON
SBS	Chr9	5689146	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g032300
SBS	Chr9	14297599	G-T	Homo	INTERGENIC
SBS	Chr9	18449831	C-T	Hetero	INTERGENIC
SBS	Chr9	21331884	C-A	Hetero	INTRON
SBS	Chr10	8326508	A-T	Hetero	START_GAINED
SBS	Chr10	9271589	T-A	Hetero	INTERGENIC
SBS	Chr10	13139608	C-T	Hetero	INTERGENIC
SBS	Chr10	15906225	T-A	Hetero	INTERGENIC
SBS	Chr11	6298952	G-A	Hetero	INTERGENIC
SBS	Chr11	10405418	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g104100
SBS	Chr11	14528117	T-A	Homo	INTERGENIC
SBS	Chr11	23083315	C-A	Hetero	INTERGENIC
SBS	Chr11	23083316	T-A	Hetero	INTERGENIC
SBS	Chr11	25606224	C-T	Homo	INTERGENIC
SBS	Chr11	25606225	C-T	Homo	INTERGENIC
SBS	Chr11	27337073	T-A	Hetero	INTERGENIC
SBS	Chr12	3640443	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g050700
SBS	Chr12	19817227	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1501747	1501752	5
Deletion	Chr11	2484755	2484762	7
Deletion	Chr9	5569472	5569473	1
Deletion	Chr11	5578657	5578663	6
Deletion	Chr2	9323333	9323334	1
Deletion	Chr9	17651726	17651730	4
Deletion	Chr10	21296756	21296759	3	OsKitaake10g168100
Deletion	Chr7	21336490	21336492	2
Deletion	Chr11	23898183	23898185	2
Deletion	Chr2	29670107	29670110	3
Deletion	Chr2	31702089	31702094	5
Deletion	Chr2	33753559	33753561	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1759917	1919180	OsKitaake09g009700
Inversion	Chr9	1761225	1919179

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes