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Mutant Information

Mutant Name	FN3202-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3202-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17806048 C-G Hetero INTERGENIC
SBS Chr1 26959202 A-T Hetero INTRON
SBS Chr1 40487748 T-A Hetero INTERGENIC
SBS Chr1 42858297 G-A Hetero INTERGENIC
SBS Chr2 2463295 G-T Hetero INTERGENIC
SBS Chr2 9503823 T-C Hetero INTERGENIC
SBS Chr2 13741913 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g150400
SBS Chr2 19291924 T-C Hetero INTERGENIC
SBS Chr2 21429639 G-A Hetero INTERGENIC
SBS Chr3 5949162 T-C Hetero INTERGENIC
SBS Chr3 5949167 T-C Hetero INTERGENIC
SBS Chr3 5949175 A-T Hetero INTERGENIC
SBS Chr3 16024662 A-T Homo INTERGENIC
SBS Chr3 16024663 A-T Homo INTERGENIC
SBS Chr3 20257387 T-C Hetero INTERGENIC
SBS Chr3 23933692 T-A Homo INTERGENIC
SBS Chr4 1568383 C-T Hetero INTRON
SBS Chr4 3971825 C-T Hetero INTERGENIC
SBS Chr4 3971826 C-T Hetero INTERGENIC
SBS Chr4 15483028 G-A Homo INTERGENIC
SBS Chr4 18298383 C-T Hetero INTERGENIC
SBS Chr5 5106481 A-G Hetero INTERGENIC
SBS Chr5 9571497 G-A Hetero INTERGENIC
SBS Chr5 20480101 G-C Hetero INTERGENIC
SBS Chr6 7825704 C-T Hetero INTERGENIC
SBS Chr7 18406828 A-T Homo INTRON
SBS Chr7 25659687 T-C Hetero INTRON
SBS Chr8 4754803 T-C Homo INTERGENIC
SBS Chr8 19240037 C-A Hetero INTERGENIC
SBS Chr8 25354906 A-T Homo INTERGENIC
SBS Chr8 27395133 G-A Hetero INTERGENIC
SBS Chr9 8931598 G-A Hetero INTERGENIC
SBS Chr9 13686690 T-A Hetero INTERGENIC
SBS Chr9 21480007 T-A Hetero INTRON
SBS Chr10 2985136 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g024500
SBS Chr10 19567742 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g143900
SBS Chr11 10877913 A-G Hetero INTRON
SBS Chr11 22262531 G-C Hetero INTERGENIC
SBS Chr12 6656049 T-A Hetero UTR_5_PRIME
SBS Chr12 25649448 C-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1028134 1028135 1
Deletion Chr9 1997073 1997076 3 OsKitaake09g010700
Deletion Chr8 4755279 4755288 9
Deletion Chr9 4881523 4881529 6
Deletion Chr7 4997001 5029000 31999 2
Deletion Chr12 8186932 8186934 2
Deletion Chr11 8716255 8716257 2
Deletion Chr8 9142001 9215000 72999 6
Deletion Chr6 9642754 9642757 3
Deletion Chr12 10731876 10731883 7
Deletion Chr7 10938001 10951000 12999
Deletion Chr8 11063348 11063350 2
Deletion Chr2 13743660 13743669 9
Deletion Chr7 14688816 14688818 2
Deletion Chr5 18277342 18277351 9
Deletion Chr10 19569001 19590000 20999 3
Deletion Chr3 20206049 20206062 13
Deletion Chr8 22125891 22125894 3 OsKitaake08g168600
Deletion Chr1 22298528 22298538 10
Deletion Chr3 23763074 23763077 3 OsKitaake03g255400
Deletion Chr7 26132021 26132022 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13122735 13122738 2
Insertion Chr2 19317152 19317156 3
Insertion Chr4 1061702 1061705 2
Insertion Chr7 17400373 17400376 2
Insertion Chr9 9445784 9445791 6
Insertion Chr12 18823179 18823182 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4992086 5192905 OsKitaake07g063600
Inversion Chr12 6525026 6660752 OsKitaake12g075201
Inversion Chr12 6525068 6660757 OsKitaake12g075201
Inversion Chr6 22968065 23024780 OsKitaake06g203300

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5028961 Chr6 27830516
Translocation Chr8 9142928 Chr6 24953229
Translocation Chr8 9214480 Chr6 24952277
Translocation Chr7 12834540 Chr6 27829281 OsKitaake07g113900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17806048	C-G	Hetero	INTERGENIC
SBS	Chr1	26959202	A-T	Hetero	INTRON
SBS	Chr1	40487748	T-A	Hetero	INTERGENIC
SBS	Chr1	42858297	G-A	Hetero	INTERGENIC
SBS	Chr2	2463295	G-T	Hetero	INTERGENIC
SBS	Chr2	9503823	T-C	Hetero	INTERGENIC
SBS	Chr2	13741913	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g150400
SBS	Chr2	19291924	T-C	Hetero	INTERGENIC
SBS	Chr2	21429639	G-A	Hetero	INTERGENIC
SBS	Chr3	5949162	T-C	Hetero	INTERGENIC
SBS	Chr3	5949167	T-C	Hetero	INTERGENIC
SBS	Chr3	5949175	A-T	Hetero	INTERGENIC
SBS	Chr3	16024662	A-T	Homo	INTERGENIC
SBS	Chr3	16024663	A-T	Homo	INTERGENIC
SBS	Chr3	20257387	T-C	Hetero	INTERGENIC
SBS	Chr3	23933692	T-A	Homo	INTERGENIC
SBS	Chr4	1568383	C-T	Hetero	INTRON
SBS	Chr4	3971825	C-T	Hetero	INTERGENIC
SBS	Chr4	3971826	C-T	Hetero	INTERGENIC
SBS	Chr4	15483028	G-A	Homo	INTERGENIC
SBS	Chr4	18298383	C-T	Hetero	INTERGENIC
SBS	Chr5	5106481	A-G	Hetero	INTERGENIC
SBS	Chr5	9571497	G-A	Hetero	INTERGENIC
SBS	Chr5	20480101	G-C	Hetero	INTERGENIC
SBS	Chr6	7825704	C-T	Hetero	INTERGENIC
SBS	Chr7	18406828	A-T	Homo	INTRON
SBS	Chr7	25659687	T-C	Hetero	INTRON
SBS	Chr8	4754803	T-C	Homo	INTERGENIC
SBS	Chr8	19240037	C-A	Hetero	INTERGENIC
SBS	Chr8	25354906	A-T	Homo	INTERGENIC
SBS	Chr8	27395133	G-A	Hetero	INTERGENIC
SBS	Chr9	8931598	G-A	Hetero	INTERGENIC
SBS	Chr9	13686690	T-A	Hetero	INTERGENIC
SBS	Chr9	21480007	T-A	Hetero	INTRON
SBS	Chr10	2985136	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g024500
SBS	Chr10	19567742	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g143900
SBS	Chr11	10877913	A-G	Hetero	INTRON
SBS	Chr11	22262531	G-C	Hetero	INTERGENIC
SBS	Chr12	6656049	T-A	Hetero	UTR_5_PRIME
SBS	Chr12	25649448	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1028134	1028135	1
Deletion	Chr9	1997073	1997076	3	OsKitaake09g010700
Deletion	Chr8	4755279	4755288	9
Deletion	Chr9	4881523	4881529	6
Deletion	Chr7	4997001	5029000	31999	2
Deletion	Chr12	8186932	8186934	2
Deletion	Chr11	8716255	8716257	2
Deletion	Chr8	9142001	9215000	72999	6
Deletion	Chr6	9642754	9642757	3
Deletion	Chr12	10731876	10731883	7
Deletion	Chr7	10938001	10951000	12999
Deletion	Chr8	11063348	11063350	2
Deletion	Chr2	13743660	13743669	9
Deletion	Chr7	14688816	14688818	2
Deletion	Chr5	18277342	18277351	9
Deletion	Chr10	19569001	19590000	20999	3
Deletion	Chr3	20206049	20206062	13
Deletion	Chr8	22125891	22125894	3	OsKitaake08g168600
Deletion	Chr1	22298528	22298538	10
Deletion	Chr3	23763074	23763077	3	OsKitaake03g255400
Deletion	Chr7	26132021	26132022	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4992086	5192905	OsKitaake07g063600
Inversion	Chr12	6525026	6660752	OsKitaake12g075201
Inversion	Chr12	6525068	6660757	OsKitaake12g075201
Inversion	Chr6	22968065	23024780	OsKitaake06g203300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes