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Mutant Information

Mutant Name	FN3203-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3203-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7755617 C-T Hetero INTERGENIC
SBS Chr1 15535850 T-C Hetero INTERGENIC
SBS Chr1 24800699 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g239500
SBS Chr1 31715597 T-A Hetero INTRON
SBS Chr1 34221411 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 34431346 C-A Hetero INTERGENIC
SBS Chr1 38719560 T-A Hetero INTERGENIC
SBS Chr1 42788415 A-T Hetero INTERGENIC
SBS Chr2 1931894 C-G Hetero INTERGENIC
SBS Chr2 17846711 T-C Hetero INTERGENIC
SBS Chr2 19858872 C-G Hetero INTERGENIC
SBS Chr2 33817147 T-A Hetero INTERGENIC
SBS Chr3 13471348 A-G Hetero INTERGENIC
SBS Chr3 18262770 T-A Homo INTERGENIC
SBS Chr3 24950236 A-T Hetero INTERGENIC
SBS Chr4 8454134 G-A Hetero INTERGENIC
SBS Chr4 15159365 T-C Hetero INTERGENIC
SBS Chr4 17194379 C-T Hetero UTR_3_PRIME
SBS Chr4 17194380 A-T Hetero UTR_3_PRIME
SBS Chr4 30687333 A-G Hetero INTERGENIC
SBS Chr5 16028292 C-T Hetero INTERGENIC
SBS Chr5 21628370 G-A Hetero INTERGENIC
SBS Chr6 2627820 G-A Homo UTR_5_PRIME
SBS Chr6 15673962 G-A Hetero INTERGENIC
SBS Chr6 16628802 A-G Hetero INTERGENIC
SBS Chr6 19542302 A-T Hetero INTERGENIC
SBS Chr6 29282782 A-T Hetero INTERGENIC
SBS Chr7 9595969 A-T Hetero INTERGENIC
SBS Chr7 16106291 G-A Homo INTERGENIC
SBS Chr8 1586888 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g019900
SBS Chr8 1770949 G-T Homo INTERGENIC
SBS Chr8 3690227 G-A Hetero INTERGENIC
SBS Chr9 1739290 C-G Hetero INTERGENIC
SBS Chr9 3114191 C-G Hetero INTERGENIC
SBS Chr9 6492290 G-A Hetero INTERGENIC
SBS Chr9 10280680 G-T Hetero INTRON
SBS Chr9 14813821 A-G Homo INTERGENIC
SBS Chr9 15020969 C-G Hetero INTERGENIC
SBS Chr9 21794212 T-C Hetero INTERGENIC
SBS Chr10 3220168 T-C Hetero INTERGENIC
SBS Chr10 12793711 T-C Hetero INTERGENIC
SBS Chr10 16962447 C-A Hetero INTERGENIC
SBS Chr10 16962448 C-A Hetero INTERGENIC
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr12 2007335 G-A Homo INTRON
SBS Chr12 8792864 T-A Hetero INTERGENIC
SBS Chr12 9106388 G-C Hetero INTERGENIC
SBS Chr12 10593710 T-C Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6484769 6484770 1
Deletion Chr10 11289256 11289260 4
Deletion Chr10 14366197 14366203 6
Deletion Chr4 15166001 15366000 199999 11
Deletion Chr6 20121502 20121509 7
Deletion Chr7 21888359 21888360 1
Deletion Chr2 27516203 27516213 10
Deletion Chr3 31947245 31947246 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 16962857 17096902 OsKitaake01g187100

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5649749 Chr4 15166631
Translocation Chr11 28519841 Chr2 15277741 2
Translocation Chr11 28519848 Chr2 15276390 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7755617	C-T	Hetero	INTERGENIC
SBS	Chr1	15535850	T-C	Hetero	INTERGENIC
SBS	Chr1	24800699	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g239500
SBS	Chr1	31715597	T-A	Hetero	INTRON
SBS	Chr1	34221411	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34431346	C-A	Hetero	INTERGENIC
SBS	Chr1	38719560	T-A	Hetero	INTERGENIC
SBS	Chr1	42788415	A-T	Hetero	INTERGENIC
SBS	Chr2	1931894	C-G	Hetero	INTERGENIC
SBS	Chr2	17846711	T-C	Hetero	INTERGENIC
SBS	Chr2	19858872	C-G	Hetero	INTERGENIC
SBS	Chr2	33817147	T-A	Hetero	INTERGENIC
SBS	Chr3	13471348	A-G	Hetero	INTERGENIC
SBS	Chr3	18262770	T-A	Homo	INTERGENIC
SBS	Chr3	24950236	A-T	Hetero	INTERGENIC
SBS	Chr4	8454134	G-A	Hetero	INTERGENIC
SBS	Chr4	15159365	T-C	Hetero	INTERGENIC
SBS	Chr4	17194379	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	17194380	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	30687333	A-G	Hetero	INTERGENIC
SBS	Chr5	16028292	C-T	Hetero	INTERGENIC
SBS	Chr5	21628370	G-A	Hetero	INTERGENIC
SBS	Chr6	2627820	G-A	Homo	UTR_5_PRIME
SBS	Chr6	15673962	G-A	Hetero	INTERGENIC
SBS	Chr6	16628802	A-G	Hetero	INTERGENIC
SBS	Chr6	19542302	A-T	Hetero	INTERGENIC
SBS	Chr6	29282782	A-T	Hetero	INTERGENIC
SBS	Chr7	9595969	A-T	Hetero	INTERGENIC
SBS	Chr7	16106291	G-A	Homo	INTERGENIC
SBS	Chr8	1586888	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019900
SBS	Chr8	1770949	G-T	Homo	INTERGENIC
SBS	Chr8	3690227	G-A	Hetero	INTERGENIC
SBS	Chr9	1739290	C-G	Hetero	INTERGENIC
SBS	Chr9	3114191	C-G	Hetero	INTERGENIC
SBS	Chr9	6492290	G-A	Hetero	INTERGENIC
SBS	Chr9	10280680	G-T	Hetero	INTRON
SBS	Chr9	14813821	A-G	Homo	INTERGENIC
SBS	Chr9	15020969	C-G	Hetero	INTERGENIC
SBS	Chr9	21794212	T-C	Hetero	INTERGENIC
SBS	Chr10	3220168	T-C	Hetero	INTERGENIC
SBS	Chr10	12793711	T-C	Hetero	INTERGENIC
SBS	Chr10	16962447	C-A	Hetero	INTERGENIC
SBS	Chr10	16962448	C-A	Hetero	INTERGENIC
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr12	2007335	G-A	Homo	INTRON
SBS	Chr12	8792864	T-A	Hetero	INTERGENIC
SBS	Chr12	9106388	G-C	Hetero	INTERGENIC
SBS	Chr12	10593710	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6484769	6484770	1
Deletion	Chr10	11289256	11289260	4
Deletion	Chr10	14366197	14366203	6
Deletion	Chr4	15166001	15366000	199999	11
Deletion	Chr6	20121502	20121509	7
Deletion	Chr7	21888359	21888360	1
Deletion	Chr2	27516203	27516213	10
Deletion	Chr3	31947245	31947246	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16962857	17096902	OsKitaake01g187100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes