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Mutant Information

Mutant Name	FN3204-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3204-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14391792 T-C Hetero INTERGENIC
SBS Chr1 35861827 A-G Hetero INTERGENIC
SBS Chr1 41757754 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 2622168 C-T Hetero INTERGENIC
SBS Chr2 17056031 G-T Hetero INTERGENIC
SBS Chr2 20636061 G-C Hetero INTERGENIC
SBS Chr2 21929469 G-T Hetero INTERGENIC
SBS Chr2 30878931 C-T Hetero INTERGENIC
SBS Chr3 1473347 G-T Hetero INTERGENIC
SBS Chr3 5146576 A-C Hetero INTERGENIC
SBS Chr3 7937808 G-C Hetero INTRON
SBS Chr3 17513581 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g215700
SBS Chr3 25237310 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g266900
SBS Chr3 33866892 T-A Hetero INTERGENIC
SBS Chr3 34382978 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g373100
SBS Chr3 35792152 G-T Homo INTERGENIC
SBS Chr4 26811244 G-A Hetero INTERGENIC
SBS Chr5 9286043 G-A Homo INTERGENIC
SBS Chr5 11153797 T-G Homo INTRON
SBS Chr5 12461106 T-A Homo INTERGENIC
SBS Chr5 15547527 C-A Homo INTERGENIC
SBS Chr6 4275349 C-A Homo SYNONYMOUS_CODING
SBS Chr6 8880301 A-G Hetero INTERGENIC
SBS Chr6 21696799 C-T Hetero INTERGENIC
SBS Chr7 319246 C-A Hetero INTERGENIC
SBS Chr7 26294708 C-G Hetero INTERGENIC
SBS Chr7 27128186 T-C Hetero INTERGENIC
SBS Chr10 4483523 G-C Hetero INTERGENIC
SBS Chr10 17991018 T-A Hetero INTERGENIC
SBS Chr10 17991019 C-A Hetero INTERGENIC
SBS Chr11 3150877 C-T Hetero INTERGENIC
SBS Chr11 16382412 A-G Homo INTRON
SBS Chr11 23179183 C-T Homo INTERGENIC
SBS Chr11 28183297 C-T Hetero INTERGENIC
SBS Chr12 2667141 C-T Hetero INTERGENIC
SBS Chr12 6764876 A-T Hetero INTERGENIC
SBS Chr12 9001127 G-T Homo INTERGENIC
SBS Chr12 14777384 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 123413 123419 6
Deletion Chr12 3785122 3785146 24
Deletion Chr9 5599110 5599133 23
Deletion Chr8 8569567 8569579 12
Deletion Chr7 10809554 10809557 3
Deletion Chr7 14103309 14103311 2
Deletion Chr4 14319001 14408000 88999 OsKitaake04g068400
Deletion Chr5 14767832 14767848 16
Deletion Chr11 14853001 15025000 171999 8
Deletion Chr10 21656840 21656849 9
Deletion Chr4 25845917 25845925 8
Deletion Chr4 26048791 26048802 11
Deletion Chr5 28211760 28211765 5
Deletion Chr3 32020018 32020020 2
Deletion Chr3 35683449 35683461 12
Deletion Chr4 36181300 36181303 3 OsKitaake04g312400
Deletion Chr2 36670806 36670812 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 10019777 10019781 3
Insertion Chr5 30226359 30226361 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1356590 1386659
Inversion Chr10 1356598 1386667
Inversion Chr3 5308516 5501482 2
Inversion Chr3 5308517 5501483 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14391792	T-C	Hetero	INTERGENIC
SBS	Chr1	35861827	A-G	Hetero	INTERGENIC
SBS	Chr1	41757754	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	2622168	C-T	Hetero	INTERGENIC
SBS	Chr2	17056031	G-T	Hetero	INTERGENIC
SBS	Chr2	20636061	G-C	Hetero	INTERGENIC
SBS	Chr2	21929469	G-T	Hetero	INTERGENIC
SBS	Chr2	30878931	C-T	Hetero	INTERGENIC
SBS	Chr3	1473347	G-T	Hetero	INTERGENIC
SBS	Chr3	5146576	A-C	Hetero	INTERGENIC
SBS	Chr3	7937808	G-C	Hetero	INTRON
SBS	Chr3	17513581	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g215700
SBS	Chr3	25237310	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g266900
SBS	Chr3	33866892	T-A	Hetero	INTERGENIC
SBS	Chr3	34382978	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g373100
SBS	Chr3	35792152	G-T	Homo	INTERGENIC
SBS	Chr4	26811244	G-A	Hetero	INTERGENIC
SBS	Chr5	9286043	G-A	Homo	INTERGENIC
SBS	Chr5	11153797	T-G	Homo	INTRON
SBS	Chr5	12461106	T-A	Homo	INTERGENIC
SBS	Chr5	15547527	C-A	Homo	INTERGENIC
SBS	Chr6	4275349	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	8880301	A-G	Hetero	INTERGENIC
SBS	Chr6	21696799	C-T	Hetero	INTERGENIC
SBS	Chr7	319246	C-A	Hetero	INTERGENIC
SBS	Chr7	26294708	C-G	Hetero	INTERGENIC
SBS	Chr7	27128186	T-C	Hetero	INTERGENIC
SBS	Chr10	4483523	G-C	Hetero	INTERGENIC
SBS	Chr10	17991018	T-A	Hetero	INTERGENIC
SBS	Chr10	17991019	C-A	Hetero	INTERGENIC
SBS	Chr11	3150877	C-T	Hetero	INTERGENIC
SBS	Chr11	16382412	A-G	Homo	INTRON
SBS	Chr11	23179183	C-T	Homo	INTERGENIC
SBS	Chr11	28183297	C-T	Hetero	INTERGENIC
SBS	Chr12	2667141	C-T	Hetero	INTERGENIC
SBS	Chr12	6764876	A-T	Hetero	INTERGENIC
SBS	Chr12	9001127	G-T	Homo	INTERGENIC
SBS	Chr12	14777384	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	123413	123419	6
Deletion	Chr12	3785122	3785146	24
Deletion	Chr9	5599110	5599133	23
Deletion	Chr8	8569567	8569579	12
Deletion	Chr7	10809554	10809557	3
Deletion	Chr7	14103309	14103311	2
Deletion	Chr4	14319001	14408000	88999	OsKitaake04g068400
Deletion	Chr5	14767832	14767848	16
Deletion	Chr11	14853001	15025000	171999	8
Deletion	Chr10	21656840	21656849	9
Deletion	Chr4	25845917	25845925	8
Deletion	Chr4	26048791	26048802	11
Deletion	Chr5	28211760	28211765	5
Deletion	Chr3	32020018	32020020	2
Deletion	Chr3	35683449	35683461	12
Deletion	Chr4	36181300	36181303	3	OsKitaake04g312400
Deletion	Chr2	36670806	36670812	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1356590	1386659
Inversion	Chr10	1356598	1386667
Inversion	Chr3	5308516	5501482	2
Inversion	Chr3	5308517	5501483	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes