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Mutant Information

Mutant Name	FN3205-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3205-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 77

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8251237 A-T Homo INTERGENIC
SBS Chr1 16121364 C-T Homo INTERGENIC
SBS Chr1 28583220 G-T Hetero INTRON
SBS Chr1 30601145 G-A Homo INTERGENIC
SBS Chr1 36587766 C-G Homo INTERGENIC
SBS Chr2 114585 A-G Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 15851223 T-G Hetero INTERGENIC
SBS Chr2 19627734 T-C Hetero INTERGENIC
SBS Chr2 19687597 G-C Hetero INTERGENIC
SBS Chr2 20566750 A-G Hetero INTERGENIC
SBS Chr2 20977878 G-A Hetero INTERGENIC
SBS Chr2 21990671 C-T Hetero INTERGENIC
SBS Chr3 2625439 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g037300
SBS Chr3 14458346 T-C Hetero INTERGENIC
SBS Chr3 17849360 G-T Hetero INTERGENIC
SBS Chr3 32314325 C-A Hetero INTERGENIC
SBS Chr4 2753129 T-C Hetero INTERGENIC
SBS Chr4 18240988 C-A Hetero INTERGENIC
SBS Chr4 18354876 T-C Hetero INTERGENIC
SBS Chr4 20051419 C-T Hetero INTRON
SBS Chr4 21355009 C-T Hetero INTERGENIC
SBS Chr4 31877222 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 36859691 T-C Hetero INTERGENIC
SBS Chr5 4302635 C-T Hetero INTERGENIC
SBS Chr5 4302636 C-A Hetero INTERGENIC
SBS Chr5 7820288 G-A Hetero INTERGENIC
SBS Chr5 10381024 G-A Hetero INTERGENIC
SBS Chr5 11099514 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g094700
SBS Chr5 11590618 G-C Hetero INTERGENIC
SBS Chr5 13176904 G-A Hetero INTERGENIC
SBS Chr5 15592328 C-T Hetero INTERGENIC
SBS Chr5 19873595 G-A Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 28393408 G-A Hetero INTERGENIC
SBS Chr6 9188228 A-T Hetero INTERGENIC
SBS Chr6 16359868 C-G Homo INTERGENIC
SBS Chr6 18617708 C-T Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 24365498 T-C Hetero INTERGENIC
SBS Chr6 25377354 G-A Hetero INTERGENIC
SBS Chr7 6692972 T-A Homo INTERGENIC
SBS Chr7 13971752 C-T Hetero INTERGENIC
SBS Chr7 20838513 G-T Hetero INTERGENIC
SBS Chr7 22433555 G-A Hetero INTRON
SBS Chr7 22609927 G-A Homo INTERGENIC
SBS Chr7 23757355 A-T Hetero INTERGENIC
SBS Chr7 26960773 T-C Hetero INTERGENIC
SBS Chr8 5954398 T-C Hetero INTRON
SBS Chr8 6044828 T-C Hetero INTERGENIC
SBS Chr8 6683547 G-A Hetero INTERGENIC
SBS Chr8 7120866 C-T Hetero INTERGENIC
SBS Chr8 7735618 C-G Hetero INTERGENIC
SBS Chr8 10428175 T-C Hetero INTRON
SBS Chr8 14547020 G-A Hetero INTERGENIC
SBS Chr8 18448684 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 293279 C-G Hetero INTERGENIC
SBS Chr9 8273256 A-G Hetero INTERGENIC
SBS Chr9 21039211 A-G Hetero INTRON
SBS Chr10 9889915 C-A Hetero INTERGENIC
SBS Chr10 11745796 C-A Hetero INTERGENIC
SBS Chr10 13068939 T-C Hetero INTERGENIC
SBS Chr10 16455643 G-T Hetero INTERGENIC
SBS Chr10 21927719 C-G Homo INTRON
SBS Chr10 21985841 C-T Homo INTERGENIC
SBS Chr11 11714877 C-A Hetero UTR_5_PRIME
SBS Chr11 11714878 T-A Hetero START_GAINED
SBS Chr11 11714882 G-A Hetero START_GAINED
SBS Chr11 14674067 G-A Hetero INTERGENIC
SBS Chr11 21704252 C-T Homo INTERGENIC
SBS Chr11 24016786 A-G Homo UTR_3_PRIME
SBS Chr11 28214435 G-T Hetero INTERGENIC
SBS Chr12 6456187 G-A Hetero INTERGENIC
SBS Chr12 11212289 A-G Homo INTERGENIC
SBS Chr12 16925306 G-A Hetero INTERGENIC
SBS Chr12 18044320 G-T Hetero INTERGENIC
SBS Chr12 26006653 A-G Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 379641 379644 3
Deletion Chr8 4784722 4784726 4
Deletion Chr5 5676959 5676960 1
Deletion Chr1 8251467 8251482 15
Deletion Chr4 8345709 8345776 67
Deletion Chr7 10016001 10016005 4
Deletion Chr8 12337905 12337911 6
Deletion Chr6 16600228 16600229 1
Deletion Chr6 17115221 17115224 3
Deletion Chr5 23280086 23280088 2
Deletion Chr12 25187183 25187221 38
Deletion Chr6 30735875 30735892 17
Deletion Chr1 33045679 33045681 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 12574045 12574048 2
Insertion Chr7 29549252 29549255 2
Insertion Chr8 18054728 18054731 2
Insertion Chr11 14619329 14619332 2
Insertion Chr11 23529392 23529395 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8975221 9428283 2
Inversion Chr9 8975224 9428294 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 29701534 Chr1 39957675 OsKitaake11g245500
Translocation Chr11 29701539 Chr1 39957985 OsKitaake11g245500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8251237	A-T	Homo	INTERGENIC
SBS	Chr1	16121364	C-T	Homo	INTERGENIC
SBS	Chr1	28583220	G-T	Hetero	INTRON
SBS	Chr1	30601145	G-A	Homo	INTERGENIC
SBS	Chr1	36587766	C-G	Homo	INTERGENIC
SBS	Chr2	114585	A-G	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	15851223	T-G	Hetero	INTERGENIC
SBS	Chr2	19627734	T-C	Hetero	INTERGENIC
SBS	Chr2	19687597	G-C	Hetero	INTERGENIC
SBS	Chr2	20566750	A-G	Hetero	INTERGENIC
SBS	Chr2	20977878	G-A	Hetero	INTERGENIC
SBS	Chr2	21990671	C-T	Hetero	INTERGENIC
SBS	Chr3	2625439	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g037300
SBS	Chr3	14458346	T-C	Hetero	INTERGENIC
SBS	Chr3	17849360	G-T	Hetero	INTERGENIC
SBS	Chr3	32314325	C-A	Hetero	INTERGENIC
SBS	Chr4	2753129	T-C	Hetero	INTERGENIC
SBS	Chr4	18240988	C-A	Hetero	INTERGENIC
SBS	Chr4	18354876	T-C	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Hetero	INTRON
SBS	Chr4	21355009	C-T	Hetero	INTERGENIC
SBS	Chr4	31877222	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	36859691	T-C	Hetero	INTERGENIC
SBS	Chr5	4302635	C-T	Hetero	INTERGENIC
SBS	Chr5	4302636	C-A	Hetero	INTERGENIC
SBS	Chr5	7820288	G-A	Hetero	INTERGENIC
SBS	Chr5	10381024	G-A	Hetero	INTERGENIC
SBS	Chr5	11099514	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g094700
SBS	Chr5	11590618	G-C	Hetero	INTERGENIC
SBS	Chr5	13176904	G-A	Hetero	INTERGENIC
SBS	Chr5	15592328	C-T	Hetero	INTERGENIC
SBS	Chr5	19873595	G-A	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	28393408	G-A	Hetero	INTERGENIC
SBS	Chr6	9188228	A-T	Hetero	INTERGENIC
SBS	Chr6	16359868	C-G	Homo	INTERGENIC
SBS	Chr6	18617708	C-T	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	24365498	T-C	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Hetero	INTERGENIC
SBS	Chr7	6692972	T-A	Homo	INTERGENIC
SBS	Chr7	13971752	C-T	Hetero	INTERGENIC
SBS	Chr7	20838513	G-T	Hetero	INTERGENIC
SBS	Chr7	22433555	G-A	Hetero	INTRON
SBS	Chr7	22609927	G-A	Homo	INTERGENIC
SBS	Chr7	23757355	A-T	Hetero	INTERGENIC
SBS	Chr7	26960773	T-C	Hetero	INTERGENIC
SBS	Chr8	5954398	T-C	Hetero	INTRON
SBS	Chr8	6044828	T-C	Hetero	INTERGENIC
SBS	Chr8	6683547	G-A	Hetero	INTERGENIC
SBS	Chr8	7120866	C-T	Hetero	INTERGENIC
SBS	Chr8	7735618	C-G	Hetero	INTERGENIC
SBS	Chr8	10428175	T-C	Hetero	INTRON
SBS	Chr8	14547020	G-A	Hetero	INTERGENIC
SBS	Chr8	18448684	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	293279	C-G	Hetero	INTERGENIC
SBS	Chr9	8273256	A-G	Hetero	INTERGENIC
SBS	Chr9	21039211	A-G	Hetero	INTRON
SBS	Chr10	9889915	C-A	Hetero	INTERGENIC
SBS	Chr10	11745796	C-A	Hetero	INTERGENIC
SBS	Chr10	13068939	T-C	Hetero	INTERGENIC
SBS	Chr10	16455643	G-T	Hetero	INTERGENIC
SBS	Chr10	21927719	C-G	Homo	INTRON
SBS	Chr10	21985841	C-T	Homo	INTERGENIC
SBS	Chr11	11714877	C-A	Hetero	UTR_5_PRIME
SBS	Chr11	11714878	T-A	Hetero	START_GAINED
SBS	Chr11	11714882	G-A	Hetero	START_GAINED
SBS	Chr11	14674067	G-A	Hetero	INTERGENIC
SBS	Chr11	21704252	C-T	Homo	INTERGENIC
SBS	Chr11	24016786	A-G	Homo	UTR_3_PRIME
SBS	Chr11	28214435	G-T	Hetero	INTERGENIC
SBS	Chr12	6456187	G-A	Hetero	INTERGENIC
SBS	Chr12	11212289	A-G	Homo	INTERGENIC
SBS	Chr12	16925306	G-A	Hetero	INTERGENIC
SBS	Chr12	18044320	G-T	Hetero	INTERGENIC
SBS	Chr12	26006653	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	379641	379644	3
Deletion	Chr8	4784722	4784726	4
Deletion	Chr5	5676959	5676960	1
Deletion	Chr1	8251467	8251482	15
Deletion	Chr4	8345709	8345776	67
Deletion	Chr7	10016001	10016005	4
Deletion	Chr8	12337905	12337911	6
Deletion	Chr6	16600228	16600229	1
Deletion	Chr6	17115221	17115224	3
Deletion	Chr5	23280086	23280088	2
Deletion	Chr12	25187183	25187221	38
Deletion	Chr6	30735875	30735892	17
Deletion	Chr1	33045679	33045681	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8975221	9428283	2
Inversion	Chr9	8975224	9428294	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes