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Mutant Information

Mutant Name	FN3206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3206-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14463585 G-T Hetero INTERGENIC
SBS Chr1 15441685 G-T Hetero INTRON
SBS Chr1 18707597 G-A Hetero INTERGENIC
SBS Chr1 19964911 T-G Hetero INTERGENIC
SBS Chr1 40440946 T-A Hetero INTERGENIC
SBS Chr2 2269348 C-G Homo NON_SYNONYMOUS_CODING OsKitaake02g033900
SBS Chr2 12144793 G-C Hetero INTERGENIC
SBS Chr2 13865163 C-T Hetero INTERGENIC
SBS Chr2 19575816 T-A Hetero INTERGENIC
SBS Chr2 21095052 T-A Homo INTERGENIC
SBS Chr2 33220025 T-C Homo INTRON
SBS Chr3 4657456 C-A Hetero INTERGENIC
SBS Chr3 16541309 C-T Hetero INTERGENIC
SBS Chr3 17990796 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g219900
SBS Chr3 17990797 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g219900
SBS Chr3 26316790 G-T Hetero INTERGENIC
SBS Chr3 32034847 C-T Hetero INTERGENIC
SBS Chr4 7202269 C-T Hetero INTERGENIC
SBS Chr4 9091909 C-T Homo INTERGENIC
SBS Chr4 9091910 G-T Homo INTERGENIC
SBS Chr4 13153334 G-A Homo INTERGENIC
SBS Chr4 32596779 G-A Hetero INTRON
SBS Chr4 35808539 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g306400
SBS Chr5 4766896 G-A Homo INTERGENIC
SBS Chr5 4766897 C-A Homo INTERGENIC
SBS Chr5 11572318 C-T Hetero INTERGENIC
SBS Chr5 15691999 G-C Hetero INTERGENIC
SBS Chr5 23695978 A-G Hetero INTERGENIC
SBS Chr5 28094585 A-T Hetero UTR_3_PRIME
SBS Chr5 29661606 C-T Hetero INTERGENIC
SBS Chr6 5359178 A-G Hetero INTERGENIC
SBS Chr6 5784126 C-T Hetero INTERGENIC
SBS Chr6 16100546 T-G Homo INTERGENIC
SBS Chr6 23510974 G-T Hetero INTERGENIC
SBS Chr6 24073301 C-T Hetero INTERGENIC
SBS Chr6 26351211 C-T Hetero INTERGENIC
SBS Chr7 21079224 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g174500
SBS Chr8 2068531 T-A Homo INTRON
SBS Chr8 8959070 G-A Hetero INTERGENIC
SBS Chr8 8959071 C-A Hetero INTERGENIC
SBS Chr8 8959072 T-A Hetero INTERGENIC
SBS Chr8 29191981 C-T Hetero INTERGENIC
SBS Chr10 14274307 C-T Hetero INTERGENIC
SBS Chr11 3368635 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g046900
SBS Chr11 26386761 C-T Hetero INTERGENIC
SBS Chr12 9246159 T-A Hetero INTERGENIC
SBS Chr12 18783525 T-G Hetero INTERGENIC
SBS Chr12 24924378 G-C Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 803446 803472 26 OsKitaake01g008600
Deletion Chr3 4286976 4286977 1
Deletion Chr2 5419247 5419249 2
Deletion Chr4 5859214 5859219 5
Deletion Chr4 6671698 6671700 2
Deletion Chr4 7801001 7822000 20999 2
Deletion Chr9 8505783 8505826 43
Deletion Chr7 9248148 9248153 5
Deletion Chr12 10826396 10826402 6
Deletion Chr7 11019648 11019651 3
Deletion Chr12 11902905 11902906 1
Deletion Chr4 12451876 12451879 3 OsKitaake04g060266
Deletion Chr8 14218867 14218868 1
Deletion Chr5 14959923 14959930 7
Deletion Chr11 15118382 15118387 5
Deletion Chr11 15283942 15283943 1
Deletion Chr8 16466388 16466389 1
Deletion Chr9 16614001 16624000 9999
Deletion Chr6 19682624 19682634 10
Deletion Chr1 19714419 19714421 2
Deletion Chr11 21134975 21134980 5
Deletion Chr2 24645163 24645172 9
Deletion Chr2 25539975 25539985 10
Deletion Chr7 26110614 26110627 13
Deletion Chr5 27717884 27717886 2
Deletion Chr4 28753655 28753675 20
Deletion Chr3 30543723 30543725 2
Deletion Chr1 33776874 33776876 2
Deletion Chr1 34638001 34650000 11999 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33232947 33232950 2
Insertion Chr2 17959355 17959358 2
Insertion Chr3 3350473 3350480 6
Insertion Chr3 5511359 5511362 2
Insertion Chr10 22567317 22567320 2
Insertion Chr5 3450051 3450053 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 9090881 9092613
Inversion Chr3 17647327 17991380 OsKitaake03g219900
Inversion Chr1 34779362 34954833 2
Inversion Chr1 34779364 34954844 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4810817 Chr1 35992419 2
Translocation Chr3 4811192 Chr1 35992422 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14463585	G-T	Hetero	INTERGENIC
SBS	Chr1	15441685	G-T	Hetero	INTRON
SBS	Chr1	18707597	G-A	Hetero	INTERGENIC
SBS	Chr1	19964911	T-G	Hetero	INTERGENIC
SBS	Chr1	40440946	T-A	Hetero	INTERGENIC
SBS	Chr2	2269348	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g033900
SBS	Chr2	12144793	G-C	Hetero	INTERGENIC
SBS	Chr2	13865163	C-T	Hetero	INTERGENIC
SBS	Chr2	19575816	T-A	Hetero	INTERGENIC
SBS	Chr2	21095052	T-A	Homo	INTERGENIC
SBS	Chr2	33220025	T-C	Homo	INTRON
SBS	Chr3	4657456	C-A	Hetero	INTERGENIC
SBS	Chr3	16541309	C-T	Hetero	INTERGENIC
SBS	Chr3	17990796	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g219900
SBS	Chr3	17990797	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g219900
SBS	Chr3	26316790	G-T	Hetero	INTERGENIC
SBS	Chr3	32034847	C-T	Hetero	INTERGENIC
SBS	Chr4	7202269	C-T	Hetero	INTERGENIC
SBS	Chr4	9091909	C-T	Homo	INTERGENIC
SBS	Chr4	9091910	G-T	Homo	INTERGENIC
SBS	Chr4	13153334	G-A	Homo	INTERGENIC
SBS	Chr4	32596779	G-A	Hetero	INTRON
SBS	Chr4	35808539	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g306400
SBS	Chr5	4766896	G-A	Homo	INTERGENIC
SBS	Chr5	4766897	C-A	Homo	INTERGENIC
SBS	Chr5	11572318	C-T	Hetero	INTERGENIC
SBS	Chr5	15691999	G-C	Hetero	INTERGENIC
SBS	Chr5	23695978	A-G	Hetero	INTERGENIC
SBS	Chr5	28094585	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	29661606	C-T	Hetero	INTERGENIC
SBS	Chr6	5359178	A-G	Hetero	INTERGENIC
SBS	Chr6	5784126	C-T	Hetero	INTERGENIC
SBS	Chr6	16100546	T-G	Homo	INTERGENIC
SBS	Chr6	23510974	G-T	Hetero	INTERGENIC
SBS	Chr6	24073301	C-T	Hetero	INTERGENIC
SBS	Chr6	26351211	C-T	Hetero	INTERGENIC
SBS	Chr7	21079224	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g174500
SBS	Chr8	2068531	T-A	Homo	INTRON
SBS	Chr8	8959070	G-A	Hetero	INTERGENIC
SBS	Chr8	8959071	C-A	Hetero	INTERGENIC
SBS	Chr8	8959072	T-A	Hetero	INTERGENIC
SBS	Chr8	29191981	C-T	Hetero	INTERGENIC
SBS	Chr10	14274307	C-T	Hetero	INTERGENIC
SBS	Chr11	3368635	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g046900
SBS	Chr11	26386761	C-T	Hetero	INTERGENIC
SBS	Chr12	9246159	T-A	Hetero	INTERGENIC
SBS	Chr12	18783525	T-G	Hetero	INTERGENIC
SBS	Chr12	24924378	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	803446	803472	26	OsKitaake01g008600
Deletion	Chr3	4286976	4286977	1
Deletion	Chr2	5419247	5419249	2
Deletion	Chr4	5859214	5859219	5
Deletion	Chr4	6671698	6671700	2
Deletion	Chr4	7801001	7822000	20999	2
Deletion	Chr9	8505783	8505826	43
Deletion	Chr7	9248148	9248153	5
Deletion	Chr12	10826396	10826402	6
Deletion	Chr7	11019648	11019651	3
Deletion	Chr12	11902905	11902906	1
Deletion	Chr4	12451876	12451879	3	OsKitaake04g060266
Deletion	Chr8	14218867	14218868	1
Deletion	Chr5	14959923	14959930	7
Deletion	Chr11	15118382	15118387	5
Deletion	Chr11	15283942	15283943	1
Deletion	Chr8	16466388	16466389	1
Deletion	Chr9	16614001	16624000	9999
Deletion	Chr6	19682624	19682634	10
Deletion	Chr1	19714419	19714421	2
Deletion	Chr11	21134975	21134980	5
Deletion	Chr2	24645163	24645172	9
Deletion	Chr2	25539975	25539985	10
Deletion	Chr7	26110614	26110627	13
Deletion	Chr5	27717884	27717886	2
Deletion	Chr4	28753655	28753675	20
Deletion	Chr3	30543723	30543725	2
Deletion	Chr1	33776874	33776876	2
Deletion	Chr1	34638001	34650000	11999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9090881	9092613
Inversion	Chr3	17647327	17991380	OsKitaake03g219900
Inversion	Chr1	34779362	34954833	2
Inversion	Chr1	34779364	34954844	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes