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Mutant Information

Mutant Name	FN3207-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3207-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35083077 C-T Hetero INTERGENIC
SBS Chr1 35660811 C-T Hetero INTERGENIC
SBS Chr1 37222873 G-T Hetero STOP_GAINED OsKitaake01g397100
SBS Chr2 9431167 C-A Hetero INTERGENIC
SBS Chr2 12320466 G-T Hetero INTERGENIC
SBS Chr2 18339935 A-C Hetero INTERGENIC
SBS Chr2 32471619 G-A Hetero INTERGENIC
SBS Chr2 35281902 G-T Homo INTERGENIC
SBS Chr3 10242697 T-A Hetero INTERGENIC
SBS Chr3 18872307 C-T Hetero INTERGENIC
SBS Chr3 19764239 G-A Hetero INTERGENIC
SBS Chr3 25595587 C-T Hetero INTRON
SBS Chr3 31225656 G-A Homo INTERGENIC
SBS Chr3 31225657 C-A Homo INTERGENIC
SBS Chr3 37317263 T-A Hetero INTRON
SBS Chr4 3791361 G-A Hetero INTERGENIC
SBS Chr4 11146612 A-G Hetero INTERGENIC
SBS Chr4 13319887 T-C Hetero INTERGENIC
SBS Chr4 17578012 G-T Hetero INTERGENIC
SBS Chr4 33691418 T-A Hetero INTERGENIC
SBS Chr5 9627885 A-G Homo INTERGENIC
SBS Chr5 10751085 C-T Hetero INTERGENIC
SBS Chr5 16972754 C-T Hetero INTERGENIC
SBS Chr6 2003201 G-A Hetero INTERGENIC
SBS Chr6 19975991 A-G Hetero INTERGENIC
SBS Chr7 2361602 A-T Hetero INTERGENIC
SBS Chr7 3602598 A-T Hetero UTR_3_PRIME
SBS Chr7 14645124 A-T Hetero UTR_3_PRIME
SBS Chr7 22530555 A-C Hetero INTRON
SBS Chr7 24400867 G-A Hetero INTERGENIC
SBS Chr8 21629614 C-A Hetero UTR_5_PRIME
SBS Chr8 28465010 T-C Hetero INTERGENIC
SBS Chr9 1417876 T-A Hetero INTRON
SBS Chr9 3414489 C-T Hetero UTR_5_PRIME
SBS Chr9 6901023 G-T Hetero INTERGENIC
SBS Chr9 8250025 G-A Hetero INTERGENIC
SBS Chr9 13725906 A-T Homo INTERGENIC
SBS Chr10 1752599 A-G Hetero INTERGENIC
SBS Chr10 23115766 T-A Hetero UTR_5_PRIME
SBS Chr10 23115767 T-A Hetero UTR_5_PRIME
SBS Chr11 1044888 C-T Hetero INTERGENIC
SBS Chr11 13045796 C-T Homo INTERGENIC
SBS Chr11 17741657 T-A Hetero INTERGENIC
SBS Chr11 26273346 T-G Hetero INTERGENIC
SBS Chr12 13780568 A-G Hetero INTRON
SBS Chr12 24750735 A-G Homo INTERGENIC
SBS Chr12 26445084 G-A Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8548001 9106000 557999 34
Deletion Chr1 8610634 8610636 2
Deletion Chr9 10499261 10499263 2
Deletion Chr6 13176866 13176868 2
Deletion Chr3 20889296 20889302 6
Deletion Chr1 23884870 23884876 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11646799 11646802 2
Insertion Chr1 14881151 14881154 2
Insertion Chr8 27722443 27722446 2
Insertion Chr11 21333569 21333574 4
Insertion Chr11 29466601 29466604 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 8551961 9420739
Inversion Chr7 9105357 9420738

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35083077	C-T	Hetero	INTERGENIC
SBS	Chr1	35660811	C-T	Hetero	INTERGENIC
SBS	Chr1	37222873	G-T	Hetero	STOP_GAINED	OsKitaake01g397100
SBS	Chr2	9431167	C-A	Hetero	INTERGENIC
SBS	Chr2	12320466	G-T	Hetero	INTERGENIC
SBS	Chr2	18339935	A-C	Hetero	INTERGENIC
SBS	Chr2	32471619	G-A	Hetero	INTERGENIC
SBS	Chr2	35281902	G-T	Homo	INTERGENIC
SBS	Chr3	10242697	T-A	Hetero	INTERGENIC
SBS	Chr3	18872307	C-T	Hetero	INTERGENIC
SBS	Chr3	19764239	G-A	Hetero	INTERGENIC
SBS	Chr3	25595587	C-T	Hetero	INTRON
SBS	Chr3	31225656	G-A	Homo	INTERGENIC
SBS	Chr3	31225657	C-A	Homo	INTERGENIC
SBS	Chr3	37317263	T-A	Hetero	INTRON
SBS	Chr4	3791361	G-A	Hetero	INTERGENIC
SBS	Chr4	11146612	A-G	Hetero	INTERGENIC
SBS	Chr4	13319887	T-C	Hetero	INTERGENIC
SBS	Chr4	17578012	G-T	Hetero	INTERGENIC
SBS	Chr4	33691418	T-A	Hetero	INTERGENIC
SBS	Chr5	9627885	A-G	Homo	INTERGENIC
SBS	Chr5	10751085	C-T	Hetero	INTERGENIC
SBS	Chr5	16972754	C-T	Hetero	INTERGENIC
SBS	Chr6	2003201	G-A	Hetero	INTERGENIC
SBS	Chr6	19975991	A-G	Hetero	INTERGENIC
SBS	Chr7	2361602	A-T	Hetero	INTERGENIC
SBS	Chr7	3602598	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	14645124	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	22530555	A-C	Hetero	INTRON
SBS	Chr7	24400867	G-A	Hetero	INTERGENIC
SBS	Chr8	21629614	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	28465010	T-C	Hetero	INTERGENIC
SBS	Chr9	1417876	T-A	Hetero	INTRON
SBS	Chr9	3414489	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	6901023	G-T	Hetero	INTERGENIC
SBS	Chr9	8250025	G-A	Hetero	INTERGENIC
SBS	Chr9	13725906	A-T	Homo	INTERGENIC
SBS	Chr10	1752599	A-G	Hetero	INTERGENIC
SBS	Chr10	23115766	T-A	Hetero	UTR_5_PRIME
SBS	Chr10	23115767	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	1044888	C-T	Hetero	INTERGENIC
SBS	Chr11	13045796	C-T	Homo	INTERGENIC
SBS	Chr11	17741657	T-A	Hetero	INTERGENIC
SBS	Chr11	26273346	T-G	Hetero	INTERGENIC
SBS	Chr12	13780568	A-G	Hetero	INTRON
SBS	Chr12	24750735	A-G	Homo	INTERGENIC
SBS	Chr12	26445084	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8548001	9106000	557999	34
Deletion	Chr1	8610634	8610636	2
Deletion	Chr9	10499261	10499263	2
Deletion	Chr6	13176866	13176868	2
Deletion	Chr3	20889296	20889302	6
Deletion	Chr1	23884870	23884876	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8551961	9420739
Inversion	Chr7	9105357	9420738

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes