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Mutant Information

Mutant Name	FN3208-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3208-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11107505 T-A Hetero INTRON
SBS Chr1 13333557 C-T Hetero INTERGENIC
SBS Chr1 13769077 A-G Hetero INTERGENIC
SBS Chr1 17620997 G-A Hetero INTERGENIC
SBS Chr1 18584918 G-A Hetero INTERGENIC
SBS Chr1 21142827 C-T Homo INTERGENIC
SBS Chr1 30144479 T-C Hetero INTERGENIC
SBS Chr2 3958572 G-A Hetero INTERGENIC
SBS Chr2 22571380 A-G Hetero INTERGENIC
SBS Chr3 8274104 A-G Hetero UTR_3_PRIME
SBS Chr3 11030958 G-T Hetero INTERGENIC
SBS Chr3 30419608 A-G Hetero INTRON
SBS Chr4 3859630 A-T Hetero INTERGENIC
SBS Chr4 9787148 C-T Hetero INTRON
SBS Chr4 18490937 G-A Hetero INTERGENIC
SBS Chr4 21692785 G-A Hetero INTERGENIC
SBS Chr4 22209456 C-A Hetero INTERGENIC
SBS Chr4 25103542 C-T Hetero INTERGENIC
SBS Chr4 35954566 T-C Hetero INTERGENIC
SBS Chr5 9849041 T-A Hetero INTRON
SBS Chr5 27325975 C-T Hetero INTERGENIC
SBS Chr5 28242859 C-T Hetero UTR_3_PRIME
SBS Chr6 1324154 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g015000
SBS Chr6 5582369 C-T Hetero INTERGENIC
SBS Chr6 13487250 C-G Homo INTERGENIC
SBS Chr7 738749 A-G Homo INTERGENIC
SBS Chr7 7756952 C-T Hetero INTERGENIC
SBS Chr7 8886985 T-C Hetero INTERGENIC
SBS Chr7 12366924 G-A Hetero INTERGENIC
SBS Chr7 25257302 A-T Hetero INTERGENIC
SBS Chr7 28069370 G-A Hetero INTERGENIC
SBS Chr8 6012935 G-T Hetero SPLICE_SITE_REGION
SBS Chr8 8185670 G-A Homo INTERGENIC
SBS Chr8 20011242 G-T Hetero INTERGENIC
SBS Chr8 20011243 T-A Hetero INTERGENIC
SBS Chr9 11890878 G-A Homo INTERGENIC
SBS Chr9 21241353 C-T Hetero INTERGENIC
SBS Chr10 606483 A-T Hetero INTERGENIC
SBS Chr10 1587754 G-A Hetero INTERGENIC
SBS Chr10 3251429 C-T Hetero INTERGENIC
SBS Chr11 5295434 G-T Homo INTRON
SBS Chr11 13210330 G-T Homo INTERGENIC
SBS Chr11 19451381 G-C Hetero INTERGENIC
SBS Chr12 2966362 A-G Hetero INTERGENIC
SBS Chr12 7109294 C-T Hetero INTERGENIC
SBS Chr12 11993668 C-T Hetero INTERGENIC
SBS Chr12 15476462 G-A Homo INTERGENIC
SBS Chr12 19477479 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 831143 831150 7
Deletion Chr11 7496240 7496242 2
Deletion Chr10 12545968 12545973 5
Deletion Chr1 17763055 17763062 7
Deletion Chr8 20096755 20096756 1
Deletion Chr5 20276349 20276358 9
Deletion Chr9 20463096 20463101 5
Deletion Chr5 21308499 21308501 2
Deletion Chr4 25280540 25280541 1
Deletion Chr1 35889431 35889433 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36784098 36784102 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11107505	T-A	Hetero	INTRON
SBS	Chr1	13333557	C-T	Hetero	INTERGENIC
SBS	Chr1	13769077	A-G	Hetero	INTERGENIC
SBS	Chr1	17620997	G-A	Hetero	INTERGENIC
SBS	Chr1	18584918	G-A	Hetero	INTERGENIC
SBS	Chr1	21142827	C-T	Homo	INTERGENIC
SBS	Chr1	30144479	T-C	Hetero	INTERGENIC
SBS	Chr2	3958572	G-A	Hetero	INTERGENIC
SBS	Chr2	22571380	A-G	Hetero	INTERGENIC
SBS	Chr3	8274104	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	11030958	G-T	Hetero	INTERGENIC
SBS	Chr3	30419608	A-G	Hetero	INTRON
SBS	Chr4	3859630	A-T	Hetero	INTERGENIC
SBS	Chr4	9787148	C-T	Hetero	INTRON
SBS	Chr4	18490937	G-A	Hetero	INTERGENIC
SBS	Chr4	21692785	G-A	Hetero	INTERGENIC
SBS	Chr4	22209456	C-A	Hetero	INTERGENIC
SBS	Chr4	25103542	C-T	Hetero	INTERGENIC
SBS	Chr4	35954566	T-C	Hetero	INTERGENIC
SBS	Chr5	9849041	T-A	Hetero	INTRON
SBS	Chr5	27325975	C-T	Hetero	INTERGENIC
SBS	Chr5	28242859	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	1324154	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g015000
SBS	Chr6	5582369	C-T	Hetero	INTERGENIC
SBS	Chr6	13487250	C-G	Homo	INTERGENIC
SBS	Chr7	738749	A-G	Homo	INTERGENIC
SBS	Chr7	7756952	C-T	Hetero	INTERGENIC
SBS	Chr7	8886985	T-C	Hetero	INTERGENIC
SBS	Chr7	12366924	G-A	Hetero	INTERGENIC
SBS	Chr7	25257302	A-T	Hetero	INTERGENIC
SBS	Chr7	28069370	G-A	Hetero	INTERGENIC
SBS	Chr8	6012935	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr8	8185670	G-A	Homo	INTERGENIC
SBS	Chr8	20011242	G-T	Hetero	INTERGENIC
SBS	Chr8	20011243	T-A	Hetero	INTERGENIC
SBS	Chr9	11890878	G-A	Homo	INTERGENIC
SBS	Chr9	21241353	C-T	Hetero	INTERGENIC
SBS	Chr10	606483	A-T	Hetero	INTERGENIC
SBS	Chr10	1587754	G-A	Hetero	INTERGENIC
SBS	Chr10	3251429	C-T	Hetero	INTERGENIC
SBS	Chr11	5295434	G-T	Homo	INTRON
SBS	Chr11	13210330	G-T	Homo	INTERGENIC
SBS	Chr11	19451381	G-C	Hetero	INTERGENIC
SBS	Chr12	2966362	A-G	Hetero	INTERGENIC
SBS	Chr12	7109294	C-T	Hetero	INTERGENIC
SBS	Chr12	11993668	C-T	Hetero	INTERGENIC
SBS	Chr12	15476462	G-A	Homo	INTERGENIC
SBS	Chr12	19477479	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	831143	831150	7
Deletion	Chr11	7496240	7496242	2
Deletion	Chr10	12545968	12545973	5
Deletion	Chr1	17763055	17763062	7
Deletion	Chr8	20096755	20096756	1
Deletion	Chr5	20276349	20276358	9
Deletion	Chr9	20463096	20463101	5
Deletion	Chr5	21308499	21308501	2
Deletion	Chr4	25280540	25280541	1
Deletion	Chr1	35889431	35889433	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes