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Mutant Information

Mutant Name	FN3209-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3209-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2930045 T-A Homo INTERGENIC
SBS Chr1 8444824 T-C Hetero INTERGENIC
SBS Chr1 14469002 C-A Hetero INTERGENIC
SBS Chr1 21367312 G-A Hetero INTERGENIC
SBS Chr1 31693998 T-C Hetero INTERGENIC
SBS Chr1 34181156 C-T Hetero INTERGENIC
SBS Chr1 40280942 T-A Hetero INTRON
SBS Chr2 8029703 C-G Hetero INTERGENIC
SBS Chr2 8031460 G-T Hetero INTERGENIC
SBS Chr2 14631629 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 17497940 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g175800
SBS Chr2 22842525 A-G Hetero INTERGENIC
SBS Chr2 25867203 C-T Hetero UTR_5_PRIME
SBS Chr2 25867204 A-T Hetero UTR_5_PRIME
SBS Chr2 33441569 A-G Hetero INTERGENIC
SBS Chr3 15675304 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g201200
SBS Chr3 18155285 T-A Hetero INTERGENIC
SBS Chr3 21005025 G-A Hetero INTERGENIC
SBS Chr3 30760204 G-A Hetero INTERGENIC
SBS Chr3 33941408 T-A Homo INTERGENIC
SBS Chr4 28364247 G-A Hetero INTERGENIC
SBS Chr5 15484971 G-C Hetero INTERGENIC
SBS Chr5 16284718 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g124400
SBS Chr5 29629424 G-T Hetero INTERGENIC
SBS Chr5 29629425 G-T Hetero INTERGENIC
SBS Chr6 1769798 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g021300
SBS Chr6 3725031 A-T Hetero INTERGENIC
SBS Chr6 7229138 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 10451710 C-T Hetero INTERGENIC
SBS Chr6 11540927 T-C Hetero INTERGENIC
SBS Chr6 13052761 G-A Hetero UTR_3_PRIME
SBS Chr6 15878914 G-C Hetero INTERGENIC
SBS Chr6 16420427 T-A Hetero INTERGENIC
SBS Chr7 429924 A-T Hetero INTERGENIC
SBS Chr7 6854080 C-T Hetero INTERGENIC
SBS Chr7 8543303 C-A Hetero INTERGENIC
SBS Chr7 10211352 C-T Hetero INTERGENIC
SBS Chr7 10430770 G-A Hetero INTERGENIC
SBS Chr7 29345604 C-T Hetero INTERGENIC
SBS Chr8 510105 C-T Homo INTERGENIC
SBS Chr8 510106 C-T Homo INTERGENIC
SBS Chr8 7488137 C-T Hetero INTERGENIC
SBS Chr8 16084848 T-C Hetero INTRON
SBS Chr8 17286572 C-A Hetero INTERGENIC
SBS Chr9 10756214 T-C Homo INTERGENIC
SBS Chr9 11580629 A-G Homo INTERGENIC
SBS Chr9 17468869 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 13715573 T-C Hetero INTERGENIC
SBS Chr10 18096463 C-T Hetero INTERGENIC
SBS Chr11 3423847 G-T Hetero INTERGENIC
SBS Chr11 3735445 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g052100
SBS Chr11 3735446 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g052100
SBS Chr11 5219955 T-A Hetero INTERGENIC
SBS Chr11 21647983 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g171300
SBS Chr11 23976359 G-A Hetero INTERGENIC
SBS Chr11 27404425 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 989524 989525 1
Deletion Chr4 2414304 2414310 6
Deletion Chr7 3181963 3181965 2
Deletion Chr2 6042540 6042551 11
Deletion Chr12 9889247 9889249 2
Deletion Chr12 10225995 10226001 6
Deletion Chr7 11890541 11890542 1
Deletion Chr9 14946574 14946577 3
Deletion Chr8 15592001 15612000 19999 2
Deletion Chr12 19374075 19374081 6
Deletion Chr8 21184196 21184200 4
Deletion Chr1 22877608 22877610 2
Deletion Chr3 23238822 23238823 1
Deletion Chr1 24551100 24551110 10
Deletion Chr6 26815230 26815232 2
Deletion Chr3 26955963 26955966 3
Deletion Chr6 30662246 30662247 1 OsKitaake06g289400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 114567 114570 2
Insertion Chr2 10699739 10699742 2
Insertion Chr4 20023231 20023234 2
Insertion Chr7 7941821 7941824 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 514729 592393
Inversion Chr8 514743 592400
Inversion Chr6 16156440 16631056
Inversion Chr6 16156443 16631056

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3116242 Chr6 30456212 OsKitaake06g286666
Translocation Chr11 3373549 Chr10 2247996 2
Translocation Chr11 3376552 Chr10 2247567 OsKitaake10g017900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2930045	T-A	Homo	INTERGENIC
SBS	Chr1	8444824	T-C	Hetero	INTERGENIC
SBS	Chr1	14469002	C-A	Hetero	INTERGENIC
SBS	Chr1	21367312	G-A	Hetero	INTERGENIC
SBS	Chr1	31693998	T-C	Hetero	INTERGENIC
SBS	Chr1	34181156	C-T	Hetero	INTERGENIC
SBS	Chr1	40280942	T-A	Hetero	INTRON
SBS	Chr2	8029703	C-G	Hetero	INTERGENIC
SBS	Chr2	8031460	G-T	Hetero	INTERGENIC
SBS	Chr2	14631629	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	17497940	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g175800
SBS	Chr2	22842525	A-G	Hetero	INTERGENIC
SBS	Chr2	25867203	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	25867204	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	33441569	A-G	Hetero	INTERGENIC
SBS	Chr3	15675304	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g201200
SBS	Chr3	18155285	T-A	Hetero	INTERGENIC
SBS	Chr3	21005025	G-A	Hetero	INTERGENIC
SBS	Chr3	30760204	G-A	Hetero	INTERGENIC
SBS	Chr3	33941408	T-A	Homo	INTERGENIC
SBS	Chr4	28364247	G-A	Hetero	INTERGENIC
SBS	Chr5	15484971	G-C	Hetero	INTERGENIC
SBS	Chr5	16284718	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g124400
SBS	Chr5	29629424	G-T	Hetero	INTERGENIC
SBS	Chr5	29629425	G-T	Hetero	INTERGENIC
SBS	Chr6	1769798	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g021300
SBS	Chr6	3725031	A-T	Hetero	INTERGENIC
SBS	Chr6	7229138	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10451710	C-T	Hetero	INTERGENIC
SBS	Chr6	11540927	T-C	Hetero	INTERGENIC
SBS	Chr6	13052761	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	15878914	G-C	Hetero	INTERGENIC
SBS	Chr6	16420427	T-A	Hetero	INTERGENIC
SBS	Chr7	429924	A-T	Hetero	INTERGENIC
SBS	Chr7	6854080	C-T	Hetero	INTERGENIC
SBS	Chr7	8543303	C-A	Hetero	INTERGENIC
SBS	Chr7	10211352	C-T	Hetero	INTERGENIC
SBS	Chr7	10430770	G-A	Hetero	INTERGENIC
SBS	Chr7	29345604	C-T	Hetero	INTERGENIC
SBS	Chr8	510105	C-T	Homo	INTERGENIC
SBS	Chr8	510106	C-T	Homo	INTERGENIC
SBS	Chr8	7488137	C-T	Hetero	INTERGENIC
SBS	Chr8	16084848	T-C	Hetero	INTRON
SBS	Chr8	17286572	C-A	Hetero	INTERGENIC
SBS	Chr9	10756214	T-C	Homo	INTERGENIC
SBS	Chr9	11580629	A-G	Homo	INTERGENIC
SBS	Chr9	17468869	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	13715573	T-C	Hetero	INTERGENIC
SBS	Chr10	18096463	C-T	Hetero	INTERGENIC
SBS	Chr11	3423847	G-T	Hetero	INTERGENIC
SBS	Chr11	3735445	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g052100
SBS	Chr11	3735446	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g052100
SBS	Chr11	5219955	T-A	Hetero	INTERGENIC
SBS	Chr11	21647983	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g171300
SBS	Chr11	23976359	G-A	Hetero	INTERGENIC
SBS	Chr11	27404425	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	989524	989525	1
Deletion	Chr4	2414304	2414310	6
Deletion	Chr7	3181963	3181965	2
Deletion	Chr2	6042540	6042551	11
Deletion	Chr12	9889247	9889249	2
Deletion	Chr12	10225995	10226001	6
Deletion	Chr7	11890541	11890542	1
Deletion	Chr9	14946574	14946577	3
Deletion	Chr8	15592001	15612000	19999	2
Deletion	Chr12	19374075	19374081	6
Deletion	Chr8	21184196	21184200	4
Deletion	Chr1	22877608	22877610	2
Deletion	Chr3	23238822	23238823	1
Deletion	Chr1	24551100	24551110	10
Deletion	Chr6	26815230	26815232	2
Deletion	Chr3	26955963	26955966	3
Deletion	Chr6	30662246	30662247	1	OsKitaake06g289400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	514729	592393
Inversion	Chr8	514743	592400
Inversion	Chr6	16156440	16631056
Inversion	Chr6	16156443	16631056

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes