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Mutant Information

Mutant Name	FN3210-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3210-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2534781 C-T Hetero INTERGENIC
SBS Chr1 6749068 A-T Hetero INTRON
SBS Chr1 6749069 C-T Hetero INTRON
SBS Chr1 11896380 C-G Hetero UTR_3_PRIME
SBS Chr1 28655912 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 9481306 T-C Hetero INTERGENIC
SBS Chr2 10795609 G-A Hetero INTERGENIC
SBS Chr3 13642237 C-T Hetero INTERGENIC
SBS Chr3 14637200 C-T Hetero INTERGENIC
SBS Chr3 22467753 G-A Hetero INTERGENIC
SBS Chr4 3826948 A-C Homo INTERGENIC
SBS Chr4 3826949 C-A Homo INTERGENIC
SBS Chr4 7616796 C-T Hetero INTERGENIC
SBS Chr4 23248777 T-A Homo UTR_3_PRIME
SBS Chr5 12508877 T-A Hetero INTERGENIC
SBS Chr5 12693511 G-A Hetero INTRON
SBS Chr5 19043109 G-A Hetero INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr5 26725294 G-A Homo INTRON
SBS Chr5 28949977 G-T Hetero INTERGENIC
SBS Chr6 1212631 G-C Hetero INTERGENIC
SBS Chr6 10585819 G-A Hetero INTERGENIC
SBS Chr6 10585820 A-T Hetero INTERGENIC
SBS Chr6 10585838 G-A Hetero INTERGENIC
SBS Chr6 12063117 C-G Hetero INTERGENIC
SBS Chr6 18321436 A-G Hetero INTERGENIC
SBS Chr7 4173899 C-T Hetero INTERGENIC
SBS Chr7 8050730 A-G Hetero INTRON
SBS Chr7 17491429 T-A Hetero INTERGENIC
SBS Chr7 26904981 G-A Hetero INTRON
SBS Chr8 13209968 C-G Homo INTERGENIC
SBS Chr8 21424381 G-A Hetero UTR_5_PRIME
SBS Chr8 26368202 T-G Hetero INTERGENIC
SBS Chr9 2844518 T-C Hetero INTERGENIC
SBS Chr9 10720312 G-T Hetero INTERGENIC
SBS Chr9 10903610 G-A Hetero INTERGENIC
SBS Chr9 17323148 G-C Hetero INTERGENIC
SBS Chr9 18318955 T-C Hetero INTERGENIC
SBS Chr9 19315388 T-A Hetero INTERGENIC
SBS Chr10 2899622 C-T Hetero INTERGENIC
SBS Chr10 4767074 C-T Hetero INTERGENIC
SBS Chr10 12171557 T-A Hetero INTERGENIC
SBS Chr10 20072639 G-A Hetero INTERGENIC
SBS Chr11 16379687 G-A Hetero INTRON
SBS Chr12 5380045 G-A Hetero INTERGENIC
SBS Chr12 15413747 G-A Hetero INTERGENIC
SBS Chr12 20214604 G-A Homo INTERGENIC
SBS Chr12 26173471 C-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5715759 5715771 12
Deletion Chr5 14100891 14100907 16
Deletion Chr6 15948508 15948509 1
Deletion Chr12 18574977 18574987 10
Deletion Chr4 20924864 20924871 7
Deletion Chr8 22296160 22296169 9
Deletion Chr5 30171178 30171179 1
Deletion Chr1 31249067 31249068 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27077297 27077300 2
Insertion Chr6 5878477 5878480 2
Insertion Chr9 7344810 7344813 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2534781	C-T	Hetero	INTERGENIC
SBS	Chr1	6749068	A-T	Hetero	INTRON
SBS	Chr1	6749069	C-T	Hetero	INTRON
SBS	Chr1	11896380	C-G	Hetero	UTR_3_PRIME
SBS	Chr1	28655912	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	9481306	T-C	Hetero	INTERGENIC
SBS	Chr2	10795609	G-A	Hetero	INTERGENIC
SBS	Chr3	13642237	C-T	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Hetero	INTERGENIC
SBS	Chr3	22467753	G-A	Hetero	INTERGENIC
SBS	Chr4	3826948	A-C	Homo	INTERGENIC
SBS	Chr4	3826949	C-A	Homo	INTERGENIC
SBS	Chr4	7616796	C-T	Hetero	INTERGENIC
SBS	Chr4	23248777	T-A	Homo	UTR_3_PRIME
SBS	Chr5	12508877	T-A	Hetero	INTERGENIC
SBS	Chr5	12693511	G-A	Hetero	INTRON
SBS	Chr5	19043109	G-A	Hetero	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr5	26725294	G-A	Homo	INTRON
SBS	Chr5	28949977	G-T	Hetero	INTERGENIC
SBS	Chr6	1212631	G-C	Hetero	INTERGENIC
SBS	Chr6	10585819	G-A	Hetero	INTERGENIC
SBS	Chr6	10585820	A-T	Hetero	INTERGENIC
SBS	Chr6	10585838	G-A	Hetero	INTERGENIC
SBS	Chr6	12063117	C-G	Hetero	INTERGENIC
SBS	Chr6	18321436	A-G	Hetero	INTERGENIC
SBS	Chr7	4173899	C-T	Hetero	INTERGENIC
SBS	Chr7	8050730	A-G	Hetero	INTRON
SBS	Chr7	17491429	T-A	Hetero	INTERGENIC
SBS	Chr7	26904981	G-A	Hetero	INTRON
SBS	Chr8	13209968	C-G	Homo	INTERGENIC
SBS	Chr8	21424381	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	26368202	T-G	Hetero	INTERGENIC
SBS	Chr9	2844518	T-C	Hetero	INTERGENIC
SBS	Chr9	10720312	G-T	Hetero	INTERGENIC
SBS	Chr9	10903610	G-A	Hetero	INTERGENIC
SBS	Chr9	17323148	G-C	Hetero	INTERGENIC
SBS	Chr9	18318955	T-C	Hetero	INTERGENIC
SBS	Chr9	19315388	T-A	Hetero	INTERGENIC
SBS	Chr10	2899622	C-T	Hetero	INTERGENIC
SBS	Chr10	4767074	C-T	Hetero	INTERGENIC
SBS	Chr10	12171557	T-A	Hetero	INTERGENIC
SBS	Chr10	20072639	G-A	Hetero	INTERGENIC
SBS	Chr11	16379687	G-A	Hetero	INTRON
SBS	Chr12	5380045	G-A	Hetero	INTERGENIC
SBS	Chr12	15413747	G-A	Hetero	INTERGENIC
SBS	Chr12	20214604	G-A	Homo	INTERGENIC
SBS	Chr12	26173471	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5715759	5715771	12
Deletion	Chr5	14100891	14100907	16
Deletion	Chr6	15948508	15948509	1
Deletion	Chr12	18574977	18574987	10
Deletion	Chr4	20924864	20924871	7
Deletion	Chr8	22296160	22296169	9
Deletion	Chr5	30171178	30171179	1
Deletion	Chr1	31249067	31249068	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes