Search Kitaake

Mutant Information

Mutant Name	FN3211-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3211-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1870346 T-G Hetero INTRON
SBS Chr1 7671046 A-G Hetero INTERGENIC
SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 12213296 C-T Hetero UTR_3_PRIME
SBS Chr1 13589538 T-C Hetero INTERGENIC
SBS Chr1 28706181 C-A Hetero INTERGENIC
SBS Chr1 30337034 G-A Hetero INTERGENIC
SBS Chr1 35796728 G-C Homo INTERGENIC
SBS Chr1 37152962 T-G Hetero INTERGENIC
SBS Chr2 4215214 C-T Hetero INTERGENIC
SBS Chr2 6674102 T-C Hetero INTERGENIC
SBS Chr2 10257490 G-A Hetero INTERGENIC
SBS Chr2 10908736 T-C Hetero INTERGENIC
SBS Chr2 12864217 C-G Hetero INTERGENIC
SBS Chr2 23989978 G-A Hetero INTERGENIC
SBS Chr2 30176420 C-T Hetero INTERGENIC
SBS Chr3 7507923 A-T Homo INTRON
SBS Chr3 15634415 T-A Hetero INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr4 3425493 C-A Homo INTERGENIC
SBS Chr4 8628659 A-C Hetero INTERGENIC
SBS Chr4 8682196 C-T Homo INTRON
SBS Chr4 22798363 T-A Hetero INTERGENIC
SBS Chr4 36595200 T-A Hetero INTERGENIC
SBS Chr5 4421137 A-C Homo INTERGENIC
SBS Chr5 6006128 G-A Hetero INTERGENIC
SBS Chr5 14330357 G-T Homo INTERGENIC
SBS Chr5 19340437 T-C Homo INTERGENIC
SBS Chr5 28868539 A-G Hetero INTERGENIC
SBS Chr6 38215 G-A Hetero INTERGENIC
SBS Chr8 2082624 C-T Hetero INTERGENIC
SBS Chr8 5068701 A-G Hetero INTERGENIC
SBS Chr8 5673376 A-T Hetero UTR_3_PRIME
SBS Chr8 7246575 T-C Hetero INTERGENIC
SBS Chr9 4017730 C-G Homo INTERGENIC
SBS Chr9 12815822 A-T Hetero INTRON
SBS Chr10 3302215 C-T Hetero INTERGENIC
SBS Chr10 5407147 C-T Hetero INTERGENIC
SBS Chr10 22025177 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g178300
SBS Chr10 23727359 C-T Homo INTERGENIC
SBS Chr11 1168081 G-A Hetero INTERGENIC
SBS Chr11 3117961 C-T Hetero INTERGENIC
SBS Chr11 25085966 A-G Hetero INTERGENIC
SBS Chr12 19397 A-G Hetero INTRON
SBS Chr12 19399 G-A Hetero INTRON
SBS Chr12 404079 A-G Homo INTERGENIC
SBS Chr12 3694824 T-G Homo INTRON
SBS Chr12 11959584 A-G Hetero INTERGENIC
SBS Chr12 20273636 T-C Homo INTERGENIC
SBS Chr12 20325812 T-C Homo INTRON
SBS Chr12 20566983 G-A Homo INTERGENIC
SBS Chr12 20608018 G-T Homo INTERGENIC
SBS Chr12 20608026 A-G Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1150011 1150013 2
Deletion Chr3 2178140 2178143 3
Deletion Chr9 4223467 4223471 4
Deletion Chr12 5133921 5133951 30
Deletion Chr12 7976847 7976849 2
Deletion Chr5 11466946 11466957 11
Deletion Chr6 11690024 11690030 6
Deletion Chr8 15660104 15660106 2
Deletion Chr11 19150597 19150599 2
Deletion Chr10 19910827 19910828 1
Deletion Chr5 20370958 20370963 5
Deletion Chr2 20789357 20789359 2
Deletion Chr2 22529924 22529925 1
Deletion Chr11 24188791 24188793 2
Deletion Chr12 24405627 24405628 1
Deletion Chr12 26058701 26058702 1
Deletion Chr6 26394000 26394004 4
Deletion Chr4 27486518 27486520 2
Deletion Chr8 28506548 28506550 2
Deletion Chr4 30271307 30271309 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22875402 22875405 2
Insertion Chr2 7805123 7805125 1
Insertion Chr3 9008677 9008679 1
Insertion Chr5 26912875 26912878 2
Insertion Chr7 20549615 20549618 2
Insertion Chr8 27752433 27752436 2
Insertion Chr11 284914 284918 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 20275287 20609426
Inversion Chr12 20275299 20609435

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1870346	T-G	Hetero	INTRON
SBS	Chr1	7671046	A-G	Hetero	INTERGENIC
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	12213296	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	13589538	T-C	Hetero	INTERGENIC
SBS	Chr1	28706181	C-A	Hetero	INTERGENIC
SBS	Chr1	30337034	G-A	Hetero	INTERGENIC
SBS	Chr1	35796728	G-C	Homo	INTERGENIC
SBS	Chr1	37152962	T-G	Hetero	INTERGENIC
SBS	Chr2	4215214	C-T	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Hetero	INTERGENIC
SBS	Chr2	10257490	G-A	Hetero	INTERGENIC
SBS	Chr2	10908736	T-C	Hetero	INTERGENIC
SBS	Chr2	12864217	C-G	Hetero	INTERGENIC
SBS	Chr2	23989978	G-A	Hetero	INTERGENIC
SBS	Chr2	30176420	C-T	Hetero	INTERGENIC
SBS	Chr3	7507923	A-T	Homo	INTRON
SBS	Chr3	15634415	T-A	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr4	3425493	C-A	Homo	INTERGENIC
SBS	Chr4	8628659	A-C	Hetero	INTERGENIC
SBS	Chr4	8682196	C-T	Homo	INTRON
SBS	Chr4	22798363	T-A	Hetero	INTERGENIC
SBS	Chr4	36595200	T-A	Hetero	INTERGENIC
SBS	Chr5	4421137	A-C	Homo	INTERGENIC
SBS	Chr5	6006128	G-A	Hetero	INTERGENIC
SBS	Chr5	14330357	G-T	Homo	INTERGENIC
SBS	Chr5	19340437	T-C	Homo	INTERGENIC
SBS	Chr5	28868539	A-G	Hetero	INTERGENIC
SBS	Chr6	38215	G-A	Hetero	INTERGENIC
SBS	Chr8	2082624	C-T	Hetero	INTERGENIC
SBS	Chr8	5068701	A-G	Hetero	INTERGENIC
SBS	Chr8	5673376	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	7246575	T-C	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Homo	INTERGENIC
SBS	Chr9	12815822	A-T	Hetero	INTRON
SBS	Chr10	3302215	C-T	Hetero	INTERGENIC
SBS	Chr10	5407147	C-T	Hetero	INTERGENIC
SBS	Chr10	22025177	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g178300
SBS	Chr10	23727359	C-T	Homo	INTERGENIC
SBS	Chr11	1168081	G-A	Hetero	INTERGENIC
SBS	Chr11	3117961	C-T	Hetero	INTERGENIC
SBS	Chr11	25085966	A-G	Hetero	INTERGENIC
SBS	Chr12	19397	A-G	Hetero	INTRON
SBS	Chr12	19399	G-A	Hetero	INTRON
SBS	Chr12	404079	A-G	Homo	INTERGENIC
SBS	Chr12	3694824	T-G	Homo	INTRON
SBS	Chr12	11959584	A-G	Hetero	INTERGENIC
SBS	Chr12	20273636	T-C	Homo	INTERGENIC
SBS	Chr12	20325812	T-C	Homo	INTRON
SBS	Chr12	20566983	G-A	Homo	INTERGENIC
SBS	Chr12	20608018	G-T	Homo	INTERGENIC
SBS	Chr12	20608026	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1150011	1150013	2
Deletion	Chr3	2178140	2178143	3
Deletion	Chr9	4223467	4223471	4
Deletion	Chr12	5133921	5133951	30
Deletion	Chr12	7976847	7976849	2
Deletion	Chr5	11466946	11466957	11
Deletion	Chr6	11690024	11690030	6
Deletion	Chr8	15660104	15660106	2
Deletion	Chr11	19150597	19150599	2
Deletion	Chr10	19910827	19910828	1
Deletion	Chr5	20370958	20370963	5
Deletion	Chr2	20789357	20789359	2
Deletion	Chr2	22529924	22529925	1
Deletion	Chr11	24188791	24188793	2
Deletion	Chr12	24405627	24405628	1
Deletion	Chr12	26058701	26058702	1
Deletion	Chr6	26394000	26394004	4
Deletion	Chr4	27486518	27486520	2
Deletion	Chr8	28506548	28506550	2
Deletion	Chr4	30271307	30271309	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	20275287	20609426
Inversion	Chr12	20275299	20609435

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes