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Mutant Information

Mutant Name	FN3212-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3212-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 352676 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g005200
SBS Chr1 4631009 G-T Hetero INTERGENIC
SBS Chr1 11331042 C-T Homo INTERGENIC
SBS Chr1 18837256 G-A Homo INTERGENIC
SBS Chr1 21747462 T-C Hetero INTERGENIC
SBS Chr1 42724690 A-G Hetero INTERGENIC
SBS Chr2 489280 C-A Hetero INTERGENIC
SBS Chr2 2499601 G-A Hetero INTERGENIC
SBS Chr2 25088550 C-T Homo INTERGENIC
SBS Chr2 26467916 C-G Homo INTERGENIC
SBS Chr3 16396453 A-C Hetero INTRON
SBS Chr3 17290249 C-G Hetero INTRON
SBS Chr3 23701683 A-T Homo INTERGENIC
SBS Chr4 535517 G-T Hetero INTERGENIC
SBS Chr4 7137776 C-G Hetero INTERGENIC
SBS Chr4 23570209 A-T Hetero INTRON
SBS Chr4 27789186 A-C Hetero INTERGENIC
SBS Chr5 2672725 C-T Hetero STOP_GAINED OsKitaake05g030650
SBS Chr5 10289971 C-A Hetero INTERGENIC
SBS Chr5 11351735 G-A Hetero INTERGENIC
SBS Chr5 12180488 C-T Hetero INTERGENIC
SBS Chr5 20452749 G-A Hetero INTERGENIC
SBS Chr6 13610065 G-A Hetero INTERGENIC
SBS Chr6 23184956 A-C Hetero INTERGENIC
SBS Chr6 24019438 T-C Homo INTRON
SBS Chr6 26989815 C-T Homo INTERGENIC
SBS Chr6 26989816 T-A Homo INTERGENIC
SBS Chr7 4032992 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g051200
SBS Chr8 16400061 C-G Homo INTERGENIC
SBS Chr8 24263770 C-T Hetero INTERGENIC
SBS Chr8 25175173 G-C Hetero INTERGENIC
SBS Chr9 12097896 A-T Homo INTRON
SBS Chr10 3125310 A-G Hetero INTERGENIC
SBS Chr10 7837349 G-C Hetero SYNONYMOUS_CODING
SBS Chr10 18082651 C-T Hetero INTERGENIC
SBS Chr11 8393970 G-A Homo INTERGENIC
SBS Chr11 17357641 C-T Hetero INTERGENIC
SBS Chr11 22960858 A-C Hetero INTERGENIC
SBS Chr12 6068128 G-A Homo INTRON
SBS Chr12 10311750 A-G Hetero INTERGENIC
SBS Chr12 13403611 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 466670 466672 2
Deletion Chr6 5627146 5627148 2
Deletion Chr11 10106529 10106541 12
Deletion Chr4 13003472 13003473 1
Deletion Chr1 14324825 14324828 3
Deletion Chr10 16327794 16327796 2
Deletion Chr10 17278062 17278068 6
Deletion Chr8 18014476 18014481 5
Deletion Chr3 23940017 23940019 2
Deletion Chr6 25364146 25364147 1
Deletion Chr2 33619742 33619743 1
Deletion Chr1 39607799 39607817 18

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41606577 41606582 4
Insertion Chr11 844990 844993 2
Insertion Chr11 12253060 12253063 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 22483062 Chr5 27151472 OsKitaake05g244800
Translocation Chr10 22483087 Chr5 27111340 OsKitaake05g244000
Translocation Chr7 28977567 Chr4 22453615 OsKitaake07g276700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	352676	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g005200
SBS	Chr1	4631009	G-T	Hetero	INTERGENIC
SBS	Chr1	11331042	C-T	Homo	INTERGENIC
SBS	Chr1	18837256	G-A	Homo	INTERGENIC
SBS	Chr1	21747462	T-C	Hetero	INTERGENIC
SBS	Chr1	42724690	A-G	Hetero	INTERGENIC
SBS	Chr2	489280	C-A	Hetero	INTERGENIC
SBS	Chr2	2499601	G-A	Hetero	INTERGENIC
SBS	Chr2	25088550	C-T	Homo	INTERGENIC
SBS	Chr2	26467916	C-G	Homo	INTERGENIC
SBS	Chr3	16396453	A-C	Hetero	INTRON
SBS	Chr3	17290249	C-G	Hetero	INTRON
SBS	Chr3	23701683	A-T	Homo	INTERGENIC
SBS	Chr4	535517	G-T	Hetero	INTERGENIC
SBS	Chr4	7137776	C-G	Hetero	INTERGENIC
SBS	Chr4	23570209	A-T	Hetero	INTRON
SBS	Chr4	27789186	A-C	Hetero	INTERGENIC
SBS	Chr5	2672725	C-T	Hetero	STOP_GAINED	OsKitaake05g030650
SBS	Chr5	10289971	C-A	Hetero	INTERGENIC
SBS	Chr5	11351735	G-A	Hetero	INTERGENIC
SBS	Chr5	12180488	C-T	Hetero	INTERGENIC
SBS	Chr5	20452749	G-A	Hetero	INTERGENIC
SBS	Chr6	13610065	G-A	Hetero	INTERGENIC
SBS	Chr6	23184956	A-C	Hetero	INTERGENIC
SBS	Chr6	24019438	T-C	Homo	INTRON
SBS	Chr6	26989815	C-T	Homo	INTERGENIC
SBS	Chr6	26989816	T-A	Homo	INTERGENIC
SBS	Chr7	4032992	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g051200
SBS	Chr8	16400061	C-G	Homo	INTERGENIC
SBS	Chr8	24263770	C-T	Hetero	INTERGENIC
SBS	Chr8	25175173	G-C	Hetero	INTERGENIC
SBS	Chr9	12097896	A-T	Homo	INTRON
SBS	Chr10	3125310	A-G	Hetero	INTERGENIC
SBS	Chr10	7837349	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	18082651	C-T	Hetero	INTERGENIC
SBS	Chr11	8393970	G-A	Homo	INTERGENIC
SBS	Chr11	17357641	C-T	Hetero	INTERGENIC
SBS	Chr11	22960858	A-C	Hetero	INTERGENIC
SBS	Chr12	6068128	G-A	Homo	INTRON
SBS	Chr12	10311750	A-G	Hetero	INTERGENIC
SBS	Chr12	13403611	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	466670	466672	2
Deletion	Chr6	5627146	5627148	2
Deletion	Chr11	10106529	10106541	12
Deletion	Chr4	13003472	13003473	1
Deletion	Chr1	14324825	14324828	3
Deletion	Chr10	16327794	16327796	2
Deletion	Chr10	17278062	17278068	6
Deletion	Chr8	18014476	18014481	5
Deletion	Chr3	23940017	23940019	2
Deletion	Chr6	25364146	25364147	1
Deletion	Chr2	33619742	33619743	1
Deletion	Chr1	39607799	39607817	18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	22483062	Chr5	27151472	OsKitaake05g244800
Translocation	Chr10	22483087	Chr5	27111340	OsKitaake05g244000
Translocation	Chr7	28977567	Chr4	22453615	OsKitaake07g276700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes