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Mutant Information

Mutant Name	FN3214-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3214-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5671993 C-G Hetero INTERGENIC
SBS Chr1 16807433 C-G Hetero INTERGENIC
SBS Chr2 1051361 G-C Hetero INTERGENIC
SBS Chr2 2090252 A-G Hetero INTERGENIC
SBS Chr2 4019918 C-T Hetero INTERGENIC
SBS Chr2 9215615 C-A Homo INTERGENIC
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr3 3584860 A-C Homo INTRON
SBS Chr3 13469235 T-A Hetero INTERGENIC
SBS Chr3 14018452 C-T Hetero INTERGENIC
SBS Chr3 17423986 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 19028892 T-C Hetero INTERGENIC
SBS Chr3 30441800 C-T Homo INTERGENIC
SBS Chr4 4303293 A-T Hetero INTERGENIC
SBS Chr4 6297128 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 10523154 G-A Hetero INTERGENIC
SBS Chr5 3896634 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g046800
SBS Chr5 7810635 C-T Hetero INTERGENIC
SBS Chr5 20158381 G-T Homo INTRON
SBS Chr5 20158384 A-T Homo INTRON
SBS Chr5 29479522 A-G Hetero INTERGENIC
SBS Chr5 29938759 G-A Hetero INTERGENIC
SBS Chr6 13481996 C-G Homo INTERGENIC
SBS Chr6 13827735 G-A Homo INTERGENIC
SBS Chr6 16413240 T-C Homo INTERGENIC
SBS Chr6 25868761 A-G Homo UTR_5_PRIME
SBS Chr7 6412881 G-A Hetero INTERGENIC
SBS Chr7 7765173 G-A Hetero INTERGENIC
SBS Chr8 3351498 A-G Hetero INTERGENIC
SBS Chr8 9282301 T-A Hetero UTR_3_PRIME
SBS Chr8 9300687 G-A Hetero INTERGENIC
SBS Chr8 9804096 C-T Hetero INTERGENIC
SBS Chr8 12288662 A-C Hetero INTERGENIC
SBS Chr9 5610850 C-A Homo INTERGENIC
SBS Chr10 13165178 A-G Homo INTERGENIC
SBS Chr10 21819917 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g175800
SBS Chr11 22099978 C-A Homo INTERGENIC
SBS Chr12 1475888 C-T Hetero SYNONYMOUS_CODING

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5547229 5547230 1 OsKitaake11g067800
Deletion Chr9 6814575 6814581 6
Deletion Chr8 18168678 18168679 1
Deletion Chr5 23163037 23163046 9
Deletion Chr2 27539645 27539647 2
Deletion Chr3 34825428 34825444 16
Deletion Chr3 37080001 37097000 16999 2
Deletion Chr1 37616995 37616997 2
Deletion Chr1 43459019 43459021 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3635584 3635587 2
Insertion Chr5 29415728 29415733 4
Insertion Chr8 7447863 7447866 2
Insertion Chr10 3732953 3732956 2
Insertion Chr10 20108401 20108404 2
Insertion Chr12 9120657 9120660 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4789356 5133306 OsKitaake08g054400
Inversion Chr8 4789359 5133309 OsKitaake08g054400
Inversion Chr6 14496654 14497900
Inversion Chr6 14496669 14497903

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7788651 Chr6 4153882
Translocation Chr6 15776795 Chr1 17293071
Translocation Chr6 16441987 Chr5 1230489

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5671993	C-G	Hetero	INTERGENIC
SBS	Chr1	16807433	C-G	Hetero	INTERGENIC
SBS	Chr2	1051361	G-C	Hetero	INTERGENIC
SBS	Chr2	2090252	A-G	Hetero	INTERGENIC
SBS	Chr2	4019918	C-T	Hetero	INTERGENIC
SBS	Chr2	9215615	C-A	Homo	INTERGENIC
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr3	3584860	A-C	Homo	INTRON
SBS	Chr3	13469235	T-A	Hetero	INTERGENIC
SBS	Chr3	14018452	C-T	Hetero	INTERGENIC
SBS	Chr3	17423986	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	19028892	T-C	Hetero	INTERGENIC
SBS	Chr3	30441800	C-T	Homo	INTERGENIC
SBS	Chr4	4303293	A-T	Hetero	INTERGENIC
SBS	Chr4	6297128	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10523154	G-A	Hetero	INTERGENIC
SBS	Chr5	3896634	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g046800
SBS	Chr5	7810635	C-T	Hetero	INTERGENIC
SBS	Chr5	20158381	G-T	Homo	INTRON
SBS	Chr5	20158384	A-T	Homo	INTRON
SBS	Chr5	29479522	A-G	Hetero	INTERGENIC
SBS	Chr5	29938759	G-A	Hetero	INTERGENIC
SBS	Chr6	13481996	C-G	Homo	INTERGENIC
SBS	Chr6	13827735	G-A	Homo	INTERGENIC
SBS	Chr6	16413240	T-C	Homo	INTERGENIC
SBS	Chr6	25868761	A-G	Homo	UTR_5_PRIME
SBS	Chr7	6412881	G-A	Hetero	INTERGENIC
SBS	Chr7	7765173	G-A	Hetero	INTERGENIC
SBS	Chr8	3351498	A-G	Hetero	INTERGENIC
SBS	Chr8	9282301	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	9300687	G-A	Hetero	INTERGENIC
SBS	Chr8	9804096	C-T	Hetero	INTERGENIC
SBS	Chr8	12288662	A-C	Hetero	INTERGENIC
SBS	Chr9	5610850	C-A	Homo	INTERGENIC
SBS	Chr10	13165178	A-G	Homo	INTERGENIC
SBS	Chr10	21819917	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g175800
SBS	Chr11	22099978	C-A	Homo	INTERGENIC
SBS	Chr12	1475888	C-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5547229	5547230	1	OsKitaake11g067800
Deletion	Chr9	6814575	6814581	6
Deletion	Chr8	18168678	18168679	1
Deletion	Chr5	23163037	23163046	9
Deletion	Chr2	27539645	27539647	2
Deletion	Chr3	34825428	34825444	16
Deletion	Chr3	37080001	37097000	16999	2
Deletion	Chr1	37616995	37616997	2
Deletion	Chr1	43459019	43459021	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4789356	5133306	OsKitaake08g054400
Inversion	Chr8	4789359	5133309	OsKitaake08g054400
Inversion	Chr6	14496654	14497900
Inversion	Chr6	14496669	14497903

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes