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Mutant Information

Mutant Name	FN3215-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3215-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28432137 G-T Hetero INTERGENIC
SBS Chr2 21192522 G-C Hetero INTERGENIC
SBS Chr2 23900676 C-T Hetero INTERGENIC
SBS Chr2 24675806 A-T Hetero INTRON
SBS Chr2 28665500 G-A Hetero INTERGENIC
SBS Chr3 3783513 T-C Hetero INTERGENIC
SBS Chr3 32835265 T-C Homo INTRON
SBS Chr4 20776918 G-A Hetero INTERGENIC
SBS Chr4 22081544 T-C Hetero INTERGENIC
SBS Chr4 33528317 T-C Hetero UTR_3_PRIME
SBS Chr5 299744 T-C Homo INTRON
SBS Chr5 17170014 C-T Homo INTERGENIC
SBS Chr6 10363286 A-G Homo INTERGENIC
SBS Chr6 14785101 G-T Hetero INTERGENIC
SBS Chr6 17038101 G-T Hetero INTERGENIC
SBS Chr6 26240162 C-T Hetero INTERGENIC
SBS Chr7 7952862 T-A Hetero INTRON
SBS Chr8 13284537 A-T Homo INTERGENIC
SBS Chr8 13284541 A-G Homo INTERGENIC
SBS Chr8 22028998 G-T Hetero INTERGENIC
SBS Chr9 4077534 A-C Hetero INTERGENIC
SBS Chr9 13721658 A-G Hetero INTERGENIC
SBS Chr9 16317078 T-C Hetero INTERGENIC
SBS Chr9 18243427 T-C Hetero INTERGENIC
SBS Chr9 20074963 A-G Homo INTERGENIC
SBS Chr9 20074965 C-T Homo INTERGENIC
SBS Chr9 20074966 C-T Homo INTERGENIC
SBS Chr10 1572924 T-G Hetero INTERGENIC
SBS Chr10 18344376 T-A Homo INTERGENIC
SBS Chr11 8516073 T-G Homo INTERGENIC
SBS Chr11 20410360 C-G Hetero INTRON
SBS Chr11 23119520 A-T Hetero INTERGENIC
SBS Chr11 25634334 G-A Hetero INTRON
SBS Chr11 26713328 T-G Hetero INTERGENIC
SBS Chr12 1186436 C-A Homo INTERGENIC
SBS Chr12 13586767 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5510003 5510004 1
Deletion Chr9 5713525 5713527 2
Deletion Chr12 10001329 10001334 5
Deletion Chr11 13277349 13277352 3
Deletion Chr8 13282759 13282767 8
Deletion Chr10 17291697 17291702 5
Deletion Chr11 17445245 17445247 2
Deletion Chr3 18410146 18410148 2
Deletion Chr2 30602361 30602363 2
Deletion Chr1 37899746 37899752 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24507995 24507998 2
Insertion Chr6 29136797 29136801 3
Insertion Chr10 22663632 22663635 2
Insertion Chr5 28827037 28827040 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1148015 Chr11 25182525
Translocation Chr12 1148020 Chr11 25168213
Translocation Chr3 9684799 Chr2 36303598 OsKitaake03g132000
Translocation Chr3 9687268 Chr2 36303606 OsKitaake03g132000
Translocation Chr11 25168215 Chr5 19592527

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28432137	G-T	Hetero	INTERGENIC
SBS	Chr2	21192522	G-C	Hetero	INTERGENIC
SBS	Chr2	23900676	C-T	Hetero	INTERGENIC
SBS	Chr2	24675806	A-T	Hetero	INTRON
SBS	Chr2	28665500	G-A	Hetero	INTERGENIC
SBS	Chr3	3783513	T-C	Hetero	INTERGENIC
SBS	Chr3	32835265	T-C	Homo	INTRON
SBS	Chr4	20776918	G-A	Hetero	INTERGENIC
SBS	Chr4	22081544	T-C	Hetero	INTERGENIC
SBS	Chr4	33528317	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	299744	T-C	Homo	INTRON
SBS	Chr5	17170014	C-T	Homo	INTERGENIC
SBS	Chr6	10363286	A-G	Homo	INTERGENIC
SBS	Chr6	14785101	G-T	Hetero	INTERGENIC
SBS	Chr6	17038101	G-T	Hetero	INTERGENIC
SBS	Chr6	26240162	C-T	Hetero	INTERGENIC
SBS	Chr7	7952862	T-A	Hetero	INTRON
SBS	Chr8	13284537	A-T	Homo	INTERGENIC
SBS	Chr8	13284541	A-G	Homo	INTERGENIC
SBS	Chr8	22028998	G-T	Hetero	INTERGENIC
SBS	Chr9	4077534	A-C	Hetero	INTERGENIC
SBS	Chr9	13721658	A-G	Hetero	INTERGENIC
SBS	Chr9	16317078	T-C	Hetero	INTERGENIC
SBS	Chr9	18243427	T-C	Hetero	INTERGENIC
SBS	Chr9	20074963	A-G	Homo	INTERGENIC
SBS	Chr9	20074965	C-T	Homo	INTERGENIC
SBS	Chr9	20074966	C-T	Homo	INTERGENIC
SBS	Chr10	1572924	T-G	Hetero	INTERGENIC
SBS	Chr10	18344376	T-A	Homo	INTERGENIC
SBS	Chr11	8516073	T-G	Homo	INTERGENIC
SBS	Chr11	20410360	C-G	Hetero	INTRON
SBS	Chr11	23119520	A-T	Hetero	INTERGENIC
SBS	Chr11	25634334	G-A	Hetero	INTRON
SBS	Chr11	26713328	T-G	Hetero	INTERGENIC
SBS	Chr12	1186436	C-A	Homo	INTERGENIC
SBS	Chr12	13586767	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5510003	5510004	1
Deletion	Chr9	5713525	5713527	2
Deletion	Chr12	10001329	10001334	5
Deletion	Chr11	13277349	13277352	3
Deletion	Chr8	13282759	13282767	8
Deletion	Chr10	17291697	17291702	5
Deletion	Chr11	17445245	17445247	2
Deletion	Chr3	18410146	18410148	2
Deletion	Chr2	30602361	30602363	2
Deletion	Chr1	37899746	37899752	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1148015	Chr11	25182525
Translocation	Chr12	1148020	Chr11	25168213
Translocation	Chr3	9684799	Chr2	36303598	OsKitaake03g132000
Translocation	Chr3	9687268	Chr2	36303606	OsKitaake03g132000
Translocation	Chr11	25168215	Chr5	19592527

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes