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Mutant Information

Mutant Name	FN3216-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3216-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31882746 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g321400
SBS Chr1 32676480 C-T Hetero UTR_5_PRIME
SBS Chr2 28093171 C-A Hetero INTRON
SBS Chr2 28568987 G-T Hetero INTERGENIC
SBS Chr3 7091500 C-A Hetero INTERGENIC
SBS Chr3 17680214 T-G Hetero INTERGENIC
SBS Chr3 19217303 T-A Hetero INTERGENIC
SBS Chr3 20419840 T-G Hetero INTERGENIC
SBS Chr4 1433236 C-T Hetero INTERGENIC
SBS Chr4 6489435 G-A Hetero INTERGENIC
SBS Chr4 7392511 A-T Hetero INTERGENIC
SBS Chr4 29985010 C-T Hetero INTERGENIC
SBS Chr5 6391615 G-T Hetero INTERGENIC
SBS Chr5 6970497 C-T Hetero INTERGENIC
SBS Chr5 9635747 A-G Hetero INTERGENIC
SBS Chr5 17824765 C-T Homo INTERGENIC
SBS Chr5 26369771 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g233000
SBS Chr6 8246388 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g103700
SBS Chr6 8617171 G-A Hetero INTERGENIC
SBS Chr6 10954619 C-A Hetero INTRON
SBS Chr6 15136596 C-T Hetero INTERGENIC
SBS Chr6 15288490 A-C Hetero INTERGENIC
SBS Chr6 18090839 A-C Hetero INTERGENIC
SBS Chr6 18459277 C-T Hetero INTERGENIC
SBS Chr6 25215107 C-A Hetero INTERGENIC
SBS Chr6 25997367 T-C Hetero INTRON
SBS Chr6 28559932 C-T Hetero INTERGENIC
SBS Chr7 2755808 G-A Hetero INTERGENIC
SBS Chr7 11729232 G-A Hetero INTERGENIC
SBS Chr7 20974952 C-T Hetero INTERGENIC
SBS Chr8 13806316 C-T Hetero INTERGENIC
SBS Chr8 17231529 T-C Hetero INTERGENIC
SBS Chr8 17887920 C-G Hetero INTERGENIC
SBS Chr8 23729603 G-A Hetero INTERGENIC
SBS Chr8 24026400 G-C Hetero INTERGENIC
SBS Chr9 4315254 C-T Homo INTERGENIC
SBS Chr9 13509900 G-A Hetero INTERGENIC
SBS Chr9 20052681 A-G Hetero INTERGENIC
SBS Chr11 13768605 C-A Homo INTERGENIC
SBS Chr11 29138999 G-A Homo INTERGENIC
SBS Chr12 10088169 G-A Hetero INTERGENIC
SBS Chr12 12886258 G-A Hetero INTERGENIC
SBS Chr12 23406110 A-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3938877 3938880 3
Deletion Chr9 5580068 5580076 8
Deletion Chr11 7935621 7935632 11
Deletion Chr3 11984273 11984275 2
Deletion Chr1 12464714 12464715 1
Deletion Chr7 12917827 12917912 85
Deletion Chr7 13202651 13202652 1
Deletion Chr11 17479482 17479490 8
Deletion Chr11 19156663 19156668 5
Deletion Chr11 19780123 19780127 4
Deletion Chr12 20484807 20484831 24
Deletion Chr10 21643893 21643900 7
Deletion Chr3 31795914 31795922 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 26682322 26682325 2
Insertion Chr1 9692959 9692961 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 20636236 Chr3 7688730 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31882746	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g321400
SBS	Chr1	32676480	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	28093171	C-A	Hetero	INTRON
SBS	Chr2	28568987	G-T	Hetero	INTERGENIC
SBS	Chr3	7091500	C-A	Hetero	INTERGENIC
SBS	Chr3	17680214	T-G	Hetero	INTERGENIC
SBS	Chr3	19217303	T-A	Hetero	INTERGENIC
SBS	Chr3	20419840	T-G	Hetero	INTERGENIC
SBS	Chr4	1433236	C-T	Hetero	INTERGENIC
SBS	Chr4	6489435	G-A	Hetero	INTERGENIC
SBS	Chr4	7392511	A-T	Hetero	INTERGENIC
SBS	Chr4	29985010	C-T	Hetero	INTERGENIC
SBS	Chr5	6391615	G-T	Hetero	INTERGENIC
SBS	Chr5	6970497	C-T	Hetero	INTERGENIC
SBS	Chr5	9635747	A-G	Hetero	INTERGENIC
SBS	Chr5	17824765	C-T	Homo	INTERGENIC
SBS	Chr5	26369771	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g233000
SBS	Chr6	8246388	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g103700
SBS	Chr6	8617171	G-A	Hetero	INTERGENIC
SBS	Chr6	10954619	C-A	Hetero	INTRON
SBS	Chr6	15136596	C-T	Hetero	INTERGENIC
SBS	Chr6	15288490	A-C	Hetero	INTERGENIC
SBS	Chr6	18090839	A-C	Hetero	INTERGENIC
SBS	Chr6	18459277	C-T	Hetero	INTERGENIC
SBS	Chr6	25215107	C-A	Hetero	INTERGENIC
SBS	Chr6	25997367	T-C	Hetero	INTRON
SBS	Chr6	28559932	C-T	Hetero	INTERGENIC
SBS	Chr7	2755808	G-A	Hetero	INTERGENIC
SBS	Chr7	11729232	G-A	Hetero	INTERGENIC
SBS	Chr7	20974952	C-T	Hetero	INTERGENIC
SBS	Chr8	13806316	C-T	Hetero	INTERGENIC
SBS	Chr8	17231529	T-C	Hetero	INTERGENIC
SBS	Chr8	17887920	C-G	Hetero	INTERGENIC
SBS	Chr8	23729603	G-A	Hetero	INTERGENIC
SBS	Chr8	24026400	G-C	Hetero	INTERGENIC
SBS	Chr9	4315254	C-T	Homo	INTERGENIC
SBS	Chr9	13509900	G-A	Hetero	INTERGENIC
SBS	Chr9	20052681	A-G	Hetero	INTERGENIC
SBS	Chr11	13768605	C-A	Homo	INTERGENIC
SBS	Chr11	29138999	G-A	Homo	INTERGENIC
SBS	Chr12	10088169	G-A	Hetero	INTERGENIC
SBS	Chr12	12886258	G-A	Hetero	INTERGENIC
SBS	Chr12	23406110	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3938877	3938880	3
Deletion	Chr9	5580068	5580076	8
Deletion	Chr11	7935621	7935632	11
Deletion	Chr3	11984273	11984275	2
Deletion	Chr1	12464714	12464715	1
Deletion	Chr7	12917827	12917912	85
Deletion	Chr7	13202651	13202652	1
Deletion	Chr11	17479482	17479490	8
Deletion	Chr11	19156663	19156668	5
Deletion	Chr11	19780123	19780127	4
Deletion	Chr12	20484807	20484831	24
Deletion	Chr10	21643893	21643900	7
Deletion	Chr3	31795914	31795922	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	20636236	Chr3	7688730	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes