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Mutant Information

Mutant Name	FN3217-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3217-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 8230555 A-G Homo INTERGENIC
SBS Chr1 10158627 A-G Hetero INTERGENIC
SBS Chr1 24309813 G-A Hetero INTERGENIC
SBS Chr1 38921433 G-T Hetero INTERGENIC
SBS Chr2 4456902 C-T Hetero INTERGENIC
SBS Chr2 7963885 G-T Hetero INTERGENIC
SBS Chr2 30525041 C-T Hetero INTERGENIC
SBS Chr2 31849582 C-T Hetero INTERGENIC
SBS Chr2 32822696 T-G Hetero INTERGENIC
SBS Chr3 5890973 C-T Hetero INTERGENIC
SBS Chr3 5890974 G-T Hetero INTERGENIC
SBS Chr3 5890975 A-T Hetero INTERGENIC
SBS Chr3 9957798 C-T Hetero INTERGENIC
SBS Chr3 12334002 C-T Hetero INTERGENIC
SBS Chr3 14362327 C-A Hetero INTERGENIC
SBS Chr3 17431113 T-C Hetero INTERGENIC
SBS Chr3 17455516 G-A Hetero INTERGENIC
SBS Chr3 25528093 G-A Homo INTERGENIC
SBS Chr3 36455949 G-A Homo SYNONYMOUS_CODING
SBS Chr4 353169 T-A Hetero UTR_3_PRIME
SBS Chr4 506100 C-T Hetero INTERGENIC
SBS Chr4 1229428 G-T Hetero INTERGENIC
SBS Chr4 3211038 G-A Hetero INTERGENIC
SBS Chr5 24500716 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g198900
SBS Chr6 11548482 C-G Hetero INTERGENIC
SBS Chr6 20256808 C-T Hetero INTERGENIC
SBS Chr7 6129109 A-G Hetero INTERGENIC
SBS Chr7 7889927 G-C Hetero INTERGENIC
SBS Chr7 21276026 G-A Hetero INTRON
SBS Chr8 461057 C-T Hetero INTERGENIC
SBS Chr8 16939331 C-A Hetero INTRON
SBS Chr8 27648134 T-A Hetero INTERGENIC
SBS Chr9 8797114 G-A Hetero INTERGENIC
SBS Chr10 7462880 T-G Hetero INTERGENIC
SBS Chr10 7756963 A-G Hetero INTERGENIC
SBS Chr10 12116778 C-T Hetero INTERGENIC
SBS Chr10 16600309 C-T Hetero UTR_5_PRIME
SBS Chr11 6531270 C-T Homo INTERGENIC
SBS Chr11 8922666 C-A Homo INTERGENIC
SBS Chr11 14210551 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g118700
SBS Chr12 26127636 C-T Hetero INTERGENIC
SBS Chr12 26253761 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g217800

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4148425 4148426 1 OsKitaake02g058400
Deletion Chr2 4663191 4663192 1
Deletion Chr1 5618837 5618838 1
Deletion Chr12 10252677 10252680 3
Deletion Chr10 12584771 12584784 13
Deletion Chr8 12823002 12823003 1
Deletion Chr3 13034001 13044000 9999
Deletion Chr4 15150001 15366000 215999 11
Deletion Chr4 15460001 15534000 73999 OsKitaake04g074800
Deletion Chr2 16664004 16664011 7
Deletion Chr12 22905594 22905598 4
Deletion Chr5 24499633 24499634 1 OsKitaake05g198900
Deletion Chr11 25284796 25284797 1
Deletion Chr1 26824826 26824827 1
Deletion Chr6 27456784 27456797 13
Deletion Chr7 28371889 28371920 31
Deletion Chr7 29661169 29661179 10
Deletion Chr1 30334930 30334932 2
Deletion Chr3 34083045 34083053 8
Deletion Chr4 34520635 34520638 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 176980 176987 6
Insertion Chr6 16196809 16196812 2
Insertion Chr8 27499542 27499545 2
Insertion Chr6 11200865 11200886 20

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13400172 13671018
Inversion Chr1 13400174 13671024

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4097236 Chr3 13044419
Translocation Chr5 4111528 Chr3 13034179 OsKitaake05g049400
Translocation Chr12 11835060 Chr7 10842400
Translocation Chr8 12828865 Chr7 27304691

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	8230555	A-G	Homo	INTERGENIC
SBS	Chr1	10158627	A-G	Hetero	INTERGENIC
SBS	Chr1	24309813	G-A	Hetero	INTERGENIC
SBS	Chr1	38921433	G-T	Hetero	INTERGENIC
SBS	Chr2	4456902	C-T	Hetero	INTERGENIC
SBS	Chr2	7963885	G-T	Hetero	INTERGENIC
SBS	Chr2	30525041	C-T	Hetero	INTERGENIC
SBS	Chr2	31849582	C-T	Hetero	INTERGENIC
SBS	Chr2	32822696	T-G	Hetero	INTERGENIC
SBS	Chr3	5890973	C-T	Hetero	INTERGENIC
SBS	Chr3	5890974	G-T	Hetero	INTERGENIC
SBS	Chr3	5890975	A-T	Hetero	INTERGENIC
SBS	Chr3	9957798	C-T	Hetero	INTERGENIC
SBS	Chr3	12334002	C-T	Hetero	INTERGENIC
SBS	Chr3	14362327	C-A	Hetero	INTERGENIC
SBS	Chr3	17431113	T-C	Hetero	INTERGENIC
SBS	Chr3	17455516	G-A	Hetero	INTERGENIC
SBS	Chr3	25528093	G-A	Homo	INTERGENIC
SBS	Chr3	36455949	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	353169	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	506100	C-T	Hetero	INTERGENIC
SBS	Chr4	1229428	G-T	Hetero	INTERGENIC
SBS	Chr4	3211038	G-A	Hetero	INTERGENIC
SBS	Chr5	24500716	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g198900
SBS	Chr6	11548482	C-G	Hetero	INTERGENIC
SBS	Chr6	20256808	C-T	Hetero	INTERGENIC
SBS	Chr7	6129109	A-G	Hetero	INTERGENIC
SBS	Chr7	7889927	G-C	Hetero	INTERGENIC
SBS	Chr7	21276026	G-A	Hetero	INTRON
SBS	Chr8	461057	C-T	Hetero	INTERGENIC
SBS	Chr8	16939331	C-A	Hetero	INTRON
SBS	Chr8	27648134	T-A	Hetero	INTERGENIC
SBS	Chr9	8797114	G-A	Hetero	INTERGENIC
SBS	Chr10	7462880	T-G	Hetero	INTERGENIC
SBS	Chr10	7756963	A-G	Hetero	INTERGENIC
SBS	Chr10	12116778	C-T	Hetero	INTERGENIC
SBS	Chr10	16600309	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	6531270	C-T	Homo	INTERGENIC
SBS	Chr11	8922666	C-A	Homo	INTERGENIC
SBS	Chr11	14210551	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g118700
SBS	Chr12	26127636	C-T	Hetero	INTERGENIC
SBS	Chr12	26253761	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g217800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4148425	4148426	1	OsKitaake02g058400
Deletion	Chr2	4663191	4663192	1
Deletion	Chr1	5618837	5618838	1
Deletion	Chr12	10252677	10252680	3
Deletion	Chr10	12584771	12584784	13
Deletion	Chr8	12823002	12823003	1
Deletion	Chr3	13034001	13044000	9999
Deletion	Chr4	15150001	15366000	215999	11
Deletion	Chr4	15460001	15534000	73999	OsKitaake04g074800
Deletion	Chr2	16664004	16664011	7
Deletion	Chr12	22905594	22905598	4
Deletion	Chr5	24499633	24499634	1	OsKitaake05g198900
Deletion	Chr11	25284796	25284797	1
Deletion	Chr1	26824826	26824827	1
Deletion	Chr6	27456784	27456797	13
Deletion	Chr7	28371889	28371920	31
Deletion	Chr7	29661169	29661179	10
Deletion	Chr1	30334930	30334932	2
Deletion	Chr3	34083045	34083053	8
Deletion	Chr4	34520635	34520638	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13400172	13671018
Inversion	Chr1	13400174	13671024

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes