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Mutant Information

Mutant Name	FN3218-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3218-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9229502 C-T Hetero INTERGENIC
SBS Chr1 17904067 C-T Hetero INTERGENIC
SBS Chr1 35703763 C-A Hetero INTERGENIC
SBS Chr1 36178510 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g384100
SBS Chr2 13261078 T-A Hetero INTERGENIC
SBS Chr2 13261080 T-A Hetero INTERGENIC
SBS Chr2 14986147 C-T Hetero INTERGENIC
SBS Chr2 17432020 A-T Homo INTERGENIC
SBS Chr3 407777 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g005900
SBS Chr3 17307441 G-A Homo INTERGENIC
SBS Chr3 18358102 G-T Homo INTERGENIC
SBS Chr3 22786254 G-A Hetero INTERGENIC
SBS Chr3 26792630 G-A Homo INTERGENIC
SBS Chr3 29717604 C-A Hetero INTERGENIC
SBS Chr4 16471006 C-T Hetero INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr5 17199519 C-G Hetero INTERGENIC
SBS Chr5 28413956 C-T Hetero INTRON
SBS Chr6 20609298 G-A Hetero INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr7 7832815 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g086200
SBS Chr7 9882175 G-C Homo INTERGENIC
SBS Chr7 18021076 G-A Hetero INTERGENIC
SBS Chr7 21739153 T-C Homo INTERGENIC
SBS Chr7 21870294 C-T Homo INTERGENIC
SBS Chr8 12235162 G-A Hetero INTERGENIC
SBS Chr8 16732126 A-G Hetero INTERGENIC
SBS Chr8 18902754 A-G Hetero INTRON
SBS Chr8 20457482 T-A Hetero INTRON
SBS Chr8 28369951 G-A Hetero INTERGENIC
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 3720245 A-T Hetero INTERGENIC
SBS Chr9 10100140 A-G Hetero INTRON
SBS Chr9 22334430 T-C Hetero INTERGENIC
SBS Chr10 6949957 G-C Hetero INTERGENIC
SBS Chr10 7719798 G-A Hetero INTERGENIC
SBS Chr10 9019251 A-C Hetero INTERGENIC
SBS Chr11 1094995 A-T Homo INTERGENIC
SBS Chr11 10664895 G-A Homo INTERGENIC
SBS Chr11 25026266 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 663260 663262 2
Deletion Chr1 795948 795954 6
Deletion Chr4 5741366 5741367 1
Deletion Chr2 5922891 5922902 11
Deletion Chr7 7055160 7055163 3
Deletion Chr3 10064001 10074000 9999 2
Deletion Chr5 10691830 10691840 10
Deletion Chr4 12971762 12971763 1 OsKitaake04g061600
Deletion Chr2 14877001 14937000 59999 OsKitaake02g157500
Deletion Chr1 16714383 16714384 1
Deletion Chr11 19251946 19251948 2
Deletion Chr1 19255999 19256006 7
Deletion Chr8 19474331 19474338 7
Deletion Chr8 21884978 21884987 9
Deletion Chr8 24901944 24901950 6
Deletion Chr11 26815976 26815986 10
Deletion Chr8 28472201 28472219 18
Deletion Chr4 32462878 32462880 2
Deletion Chr4 33995711 33995728 17 OsKitaake04g283600

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 351023 351027 3
Insertion Chr10 14378527 14378530 2
Insertion Chr10 16232133 16232137 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 13250267 13308643
Inversion Chr2 14025590 14031389 OsKitaake02g151250
Inversion Chr10 15049783 15109128
Inversion Chr10 15049795 15109132

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9229502	C-T	Hetero	INTERGENIC
SBS	Chr1	17904067	C-T	Hetero	INTERGENIC
SBS	Chr1	35703763	C-A	Hetero	INTERGENIC
SBS	Chr1	36178510	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g384100
SBS	Chr2	13261078	T-A	Hetero	INTERGENIC
SBS	Chr2	13261080	T-A	Hetero	INTERGENIC
SBS	Chr2	14986147	C-T	Hetero	INTERGENIC
SBS	Chr2	17432020	A-T	Homo	INTERGENIC
SBS	Chr3	407777	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g005900
SBS	Chr3	17307441	G-A	Homo	INTERGENIC
SBS	Chr3	18358102	G-T	Homo	INTERGENIC
SBS	Chr3	22786254	G-A	Hetero	INTERGENIC
SBS	Chr3	26792630	G-A	Homo	INTERGENIC
SBS	Chr3	29717604	C-A	Hetero	INTERGENIC
SBS	Chr4	16471006	C-T	Hetero	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr5	17199519	C-G	Hetero	INTERGENIC
SBS	Chr5	28413956	C-T	Hetero	INTRON
SBS	Chr6	20609298	G-A	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr7	7832815	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g086200
SBS	Chr7	9882175	G-C	Homo	INTERGENIC
SBS	Chr7	18021076	G-A	Hetero	INTERGENIC
SBS	Chr7	21739153	T-C	Homo	INTERGENIC
SBS	Chr7	21870294	C-T	Homo	INTERGENIC
SBS	Chr8	12235162	G-A	Hetero	INTERGENIC
SBS	Chr8	16732126	A-G	Hetero	INTERGENIC
SBS	Chr8	18902754	A-G	Hetero	INTRON
SBS	Chr8	20457482	T-A	Hetero	INTRON
SBS	Chr8	28369951	G-A	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	3720245	A-T	Hetero	INTERGENIC
SBS	Chr9	10100140	A-G	Hetero	INTRON
SBS	Chr9	22334430	T-C	Hetero	INTERGENIC
SBS	Chr10	6949957	G-C	Hetero	INTERGENIC
SBS	Chr10	7719798	G-A	Hetero	INTERGENIC
SBS	Chr10	9019251	A-C	Hetero	INTERGENIC
SBS	Chr11	1094995	A-T	Homo	INTERGENIC
SBS	Chr11	10664895	G-A	Homo	INTERGENIC
SBS	Chr11	25026266	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	663260	663262	2
Deletion	Chr1	795948	795954	6
Deletion	Chr4	5741366	5741367	1
Deletion	Chr2	5922891	5922902	11
Deletion	Chr7	7055160	7055163	3
Deletion	Chr3	10064001	10074000	9999	2
Deletion	Chr5	10691830	10691840	10
Deletion	Chr4	12971762	12971763	1	OsKitaake04g061600
Deletion	Chr2	14877001	14937000	59999	OsKitaake02g157500
Deletion	Chr1	16714383	16714384	1
Deletion	Chr11	19251946	19251948	2
Deletion	Chr1	19255999	19256006	7
Deletion	Chr8	19474331	19474338	7
Deletion	Chr8	21884978	21884987	9
Deletion	Chr8	24901944	24901950	6
Deletion	Chr11	26815976	26815986	10
Deletion	Chr8	28472201	28472219	18
Deletion	Chr4	32462878	32462880	2
Deletion	Chr4	33995711	33995728	17	OsKitaake04g283600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13250267	13308643
Inversion	Chr2	14025590	14031389	OsKitaake02g151250
Inversion	Chr10	15049783	15109128
Inversion	Chr10	15049795	15109132

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes