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Mutant Information

Mutant Name	FN3219-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3219-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 3697371 A-G Hetero UTR_3_PRIME
SBS Chr1 4040357 T-A Hetero INTERGENIC
SBS Chr1 8102410 C-A Hetero INTERGENIC
SBS Chr1 16564875 T-C Homo INTERGENIC
SBS Chr1 17017797 A-T Hetero UTR_5_PRIME
SBS Chr1 38781587 A-G Homo UTR_5_PRIME
SBS Chr2 11027600 T-A Hetero INTERGENIC
SBS Chr2 15821528 C-T Hetero INTERGENIC
SBS Chr2 35527658 C-T Hetero INTRON
SBS Chr2 36736260 G-A Hetero INTERGENIC
SBS Chr3 8508342 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g116700
SBS Chr3 8511675 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g116700
SBS Chr3 26976926 T-C Homo INTERGENIC
SBS Chr3 29717978 G-A Hetero INTERGENIC
SBS Chr3 33644885 C-T Homo INTERGENIC
SBS Chr4 4195178 G-A Hetero INTERGENIC
SBS Chr4 16506925 C-G Hetero INTRON
SBS Chr4 16644600 T-A Homo INTERGENIC
SBS Chr4 31011373 T-C Hetero INTERGENIC
SBS Chr4 32890845 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 6298044 A-T Hetero INTERGENIC
SBS Chr5 6299474 T-C Hetero INTERGENIC
SBS Chr5 25227132 G-A Hetero INTERGENIC
SBS Chr6 2663243 C-T Hetero INTERGENIC
SBS Chr6 9295162 T-A Hetero INTERGENIC
SBS Chr7 6362246 C-G Hetero INTERGENIC
SBS Chr7 14676669 C-T Hetero INTERGENIC
SBS Chr7 14676670 G-T Hetero INTERGENIC
SBS Chr7 14676671 A-T Hetero INTERGENIC
SBS Chr7 19008316 T-C Hetero INTERGENIC
SBS Chr7 19388340 A-G Hetero INTERGENIC
SBS Chr7 21189608 C-T Hetero INTERGENIC
SBS Chr7 28077400 T-C Homo INTERGENIC
SBS Chr7 28706493 G-A Hetero INTERGENIC
SBS Chr8 1574375 G-A Hetero INTERGENIC
SBS Chr8 16176877 C-T Homo INTERGENIC
SBS Chr8 21290436 A-G Hetero INTERGENIC
SBS Chr9 10338061 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 17533875 G-A Hetero INTERGENIC
SBS Chr10 19712447 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g146000
SBS Chr11 6685921 C-T Hetero INTERGENIC
SBS Chr11 7167550 G-A Hetero INTERGENIC
SBS Chr11 13631490 T-C Hetero INTERGENIC
SBS Chr11 15982145 G-T Hetero INTERGENIC
SBS Chr11 25516145 C-A Homo INTERGENIC
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 4517465 G-A Hetero INTERGENIC
SBS Chr12 22570856 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1081001 1186000 104999 11
Deletion Chr7 3646001 3704000 57999 11
Deletion Chr3 5156857 5156858 1
Deletion Chr8 6332586 6332601 15
Deletion Chr12 7856001 7867000 10999
Deletion Chr6 9398618 9398624 6
Deletion Chr2 10130240 10130242 2
Deletion Chr4 14572996 14572997 1
Deletion Chr4 17392214 17392217 3
Deletion Chr3 17763640 17763663 23
Deletion Chr7 18807001 18967000 159999 14
Deletion Chr8 19889156 19889157 1
Deletion Chr12 23821001 24061000 239999 24
Deletion Chr4 26487687 26487688 1
Deletion Chr11 26524262 26524263 1
Deletion Chr1 34468580 34468586 6
Deletion Chr1 42445018 42445019 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22067237 22067240 2
Insertion Chr2 29838891 29838895 3
Insertion Chr10 16315795 16315798 2
Insertion Chr11 11043632 11043635 2
Insertion Chr11 28915101 28915104 2
Insertion Chr12 25488962 25488965 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 17448051 17454425 OsKitaake08g130900
Inversion Chr8 17448054 17454454 OsKitaake08g130900
Inversion Chr1 31504066 31820794
Inversion Chr1 31504079 31820798

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7865343 Chr6 1425743 OsKitaake06g016200
Translocation Chr12 7866788 Chr6 1425728 OsKitaake06g016200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	3697371	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	4040357	T-A	Hetero	INTERGENIC
SBS	Chr1	8102410	C-A	Hetero	INTERGENIC
SBS	Chr1	16564875	T-C	Homo	INTERGENIC
SBS	Chr1	17017797	A-T	Hetero	UTR_5_PRIME
SBS	Chr1	38781587	A-G	Homo	UTR_5_PRIME
SBS	Chr2	11027600	T-A	Hetero	INTERGENIC
SBS	Chr2	15821528	C-T	Hetero	INTERGENIC
SBS	Chr2	35527658	C-T	Hetero	INTRON
SBS	Chr2	36736260	G-A	Hetero	INTERGENIC
SBS	Chr3	8508342	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g116700
SBS	Chr3	8511675	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g116700
SBS	Chr3	26976926	T-C	Homo	INTERGENIC
SBS	Chr3	29717978	G-A	Hetero	INTERGENIC
SBS	Chr3	33644885	C-T	Homo	INTERGENIC
SBS	Chr4	4195178	G-A	Hetero	INTERGENIC
SBS	Chr4	16506925	C-G	Hetero	INTRON
SBS	Chr4	16644600	T-A	Homo	INTERGENIC
SBS	Chr4	31011373	T-C	Hetero	INTERGENIC
SBS	Chr4	32890845	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6298044	A-T	Hetero	INTERGENIC
SBS	Chr5	6299474	T-C	Hetero	INTERGENIC
SBS	Chr5	25227132	G-A	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Hetero	INTERGENIC
SBS	Chr6	9295162	T-A	Hetero	INTERGENIC
SBS	Chr7	6362246	C-G	Hetero	INTERGENIC
SBS	Chr7	14676669	C-T	Hetero	INTERGENIC
SBS	Chr7	14676670	G-T	Hetero	INTERGENIC
SBS	Chr7	14676671	A-T	Hetero	INTERGENIC
SBS	Chr7	19008316	T-C	Hetero	INTERGENIC
SBS	Chr7	19388340	A-G	Hetero	INTERGENIC
SBS	Chr7	21189608	C-T	Hetero	INTERGENIC
SBS	Chr7	28077400	T-C	Homo	INTERGENIC
SBS	Chr7	28706493	G-A	Hetero	INTERGENIC
SBS	Chr8	1574375	G-A	Hetero	INTERGENIC
SBS	Chr8	16176877	C-T	Homo	INTERGENIC
SBS	Chr8	21290436	A-G	Hetero	INTERGENIC
SBS	Chr9	10338061	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17533875	G-A	Hetero	INTERGENIC
SBS	Chr10	19712447	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g146000
SBS	Chr11	6685921	C-T	Hetero	INTERGENIC
SBS	Chr11	7167550	G-A	Hetero	INTERGENIC
SBS	Chr11	13631490	T-C	Hetero	INTERGENIC
SBS	Chr11	15982145	G-T	Hetero	INTERGENIC
SBS	Chr11	25516145	C-A	Homo	INTERGENIC
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	4517465	G-A	Hetero	INTERGENIC
SBS	Chr12	22570856	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1081001	1186000	104999	11
Deletion	Chr7	3646001	3704000	57999	11
Deletion	Chr3	5156857	5156858	1
Deletion	Chr8	6332586	6332601	15
Deletion	Chr12	7856001	7867000	10999
Deletion	Chr6	9398618	9398624	6
Deletion	Chr2	10130240	10130242	2
Deletion	Chr4	14572996	14572997	1
Deletion	Chr4	17392214	17392217	3
Deletion	Chr3	17763640	17763663	23
Deletion	Chr7	18807001	18967000	159999	14
Deletion	Chr8	19889156	19889157	1
Deletion	Chr12	23821001	24061000	239999	24
Deletion	Chr4	26487687	26487688	1
Deletion	Chr11	26524262	26524263	1
Deletion	Chr1	34468580	34468586	6
Deletion	Chr1	42445018	42445019	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	17448051	17454425	OsKitaake08g130900
Inversion	Chr8	17448054	17454454	OsKitaake08g130900
Inversion	Chr1	31504066	31820794
Inversion	Chr1	31504079	31820798

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes