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| Mutant Information |
|---|
| Mutant Name | FN322-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN322-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6514365 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 13010767 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 23375966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 383152 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9060981 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 12861550 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 20064175 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 28445572 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28445573 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6644006 | C-T | Homo | INTRON | |
| SBS | Chr3 | 11544353 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12346311 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 12346312 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 35983817 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3350861 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 7892737 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g078400 |
| SBS | Chr5 | 21927151 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26803618 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 26803619 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 26803620 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 13084444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13736456 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 22119147 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 8686818 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 9876211 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23480993 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6264483 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 4881399 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19319288 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21142245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 240051 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 351337 | C-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr11 | 1636651 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19745435 | C-A | Homo | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2252084 | 2252086 | 2 | |
| Deletion | Chr12 | 3408494 | 3408495 | 1 | OsKitaake12g048200 |
| Deletion | Chr9 | 6498484 | 6498486 | 2 | |
| Deletion | Chr4 | 8893051 | 8893053 | 2 | |
| Deletion | Chr1 | 38466001 | 38493000 | 26999 | 3 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25535087 | 25535090 | 2 | |
| Insertion | Chr8 | 8874162 | 8874165 | 2 | |
| Insertion | Chr8 | 17065125 | 17065128 | 2 | |
| Insertion | Chr5 | 15424490 | 15424492 | 1 | OsKitaake05g118300  |
| Insertion | Chr5 | 16412157 | 16412161 | 3 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 14394290 | Chr1 | 26784385 |