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Mutant Information

Mutant Name	FN3221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3221-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17237996 G-A Homo INTERGENIC
SBS Chr1 26946112 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 30846122 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 34839318 G-A Hetero INTERGENIC
SBS Chr1 42333178 C-T Homo INTERGENIC
SBS Chr2 25008970 G-T Hetero INTERGENIC
SBS Chr3 3156573 C-T Homo INTERGENIC
SBS Chr3 5838482 A-G Homo INTERGENIC
SBS Chr3 11271752 C-T Hetero INTERGENIC
SBS Chr3 14845966 G-A Hetero INTERGENIC
SBS Chr3 24364575 C-T Hetero INTERGENIC
SBS Chr3 26424450 A-C Hetero UTR_3_PRIME
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 31001208 G-C Hetero INTRON
SBS Chr3 31028847 A-C Hetero SPLICE_SITE_REGION
SBS Chr3 36499750 G-A Hetero INTERGENIC
SBS Chr4 7996500 A-T Hetero INTERGENIC
SBS Chr4 9165725 C-T Homo INTERGENIC
SBS Chr4 11401307 C-T Hetero INTERGENIC
SBS Chr4 32307674 G-A Hetero INTRON
SBS Chr4 33654603 G-A Hetero INTERGENIC
SBS Chr5 13045461 T-C Hetero INTRON
SBS Chr5 25719238 A-T Homo INTERGENIC
SBS Chr5 26030023 C-A Homo INTERGENIC
SBS Chr6 3133677 G-C Hetero INTRON
SBS Chr6 12207078 T-G Hetero INTERGENIC
SBS Chr6 21865850 C-T Homo SYNONYMOUS_CODING
SBS Chr6 28910610 T-G Homo INTRON
SBS Chr7 2505519 G-A Hetero INTERGENIC
SBS Chr7 3005063 A-T Hetero INTERGENIC
SBS Chr7 9162361 C-T Homo INTERGENIC
SBS Chr7 22991555 G-A Hetero INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr8 2316900 C-T Hetero INTERGENIC
SBS Chr8 4191651 A-T Hetero INTERGENIC
SBS Chr8 4191654 T-C Hetero INTERGENIC
SBS Chr8 11153702 G-A Homo INTERGENIC
SBS Chr8 19378930 A-T Hetero INTERGENIC
SBS Chr8 19378931 A-T Hetero INTERGENIC
SBS Chr10 1560489 T-A Homo INTERGENIC
SBS Chr10 8150453 C-T Homo INTERGENIC
SBS Chr10 10168960 T-G Homo INTERGENIC
SBS Chr10 13761155 G-A Homo INTRON
SBS Chr10 14329007 C-T Hetero INTERGENIC
SBS Chr10 14896896 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g092801
SBS Chr11 5316520 C-T Homo INTRON
SBS Chr11 5381595 C-T Hetero INTERGENIC
SBS Chr11 25568059 G-A Homo INTERGENIC
SBS Chr12 10576506 G-T Hetero INTERGENIC
SBS Chr12 11121275 G-A Hetero INTERGENIC
SBS Chr12 15501932 A-C Hetero INTERGENIC
SBS Chr12 16800120 G-T Hetero INTERGENIC
SBS Chr12 19735691 C-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 948797 948814 17
Deletion Chr7 2090306 2090310 4
Deletion Chr7 6164549 6164561 12
Deletion Chr11 7977670 7977672 2
Deletion Chr10 10029113 10029115 2
Deletion Chr4 10192415 10192417 2
Deletion Chr9 10270229 10270230 1
Deletion Chr8 14025498 14025505 7
Deletion Chr5 15600001 15662000 61999 4
Deletion Chr4 16859850 16859851 1
Deletion Chr4 16920147 16920152 5
Deletion Chr7 22497004 22497005 1
Deletion Chr5 25660214 25660215 1
Deletion Chr4 26103326 26103341 15
Deletion Chr7 27712989 27712990 1
Deletion Chr3 30118086 30118089 3 OsKitaake03g315600
Deletion Chr1 31471872 31471884 12 OsKitaake01g315800
Deletion Chr2 33385001 33393000 7999 2
Deletion Chr4 35835936 35835937 1
Deletion Chr1 41695986 41695994 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2142010 2142013 2
Insertion Chr2 29830062 29830065 2
Insertion Chr3 8085227 8085230 2
Insertion Chr3 37589290 37589294 3
Insertion Chr4 22525662 22525665 2
Insertion Chr6 11208337 11208341 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 4729942 4758540
Inversion Chr3 4729945 4758542
Inversion Chr1 28930718 29069058 2
Inversion Chr1 28930721 29069069 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 5032214 Chr1 16941521
Translocation Chr10 5032226 Chr1 16941515
Translocation Chr9 10488899 Chr5 15601285
Translocation Chr9 10488912 Chr5 15267573
Translocation Chr7 19845247 Chr4 23173156 2
Translocation Chr7 19845920 Chr4 23173165 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17237996	G-A	Homo	INTERGENIC
SBS	Chr1	26946112	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	30846122	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34839318	G-A	Hetero	INTERGENIC
SBS	Chr1	42333178	C-T	Homo	INTERGENIC
SBS	Chr2	25008970	G-T	Hetero	INTERGENIC
SBS	Chr3	3156573	C-T	Homo	INTERGENIC
SBS	Chr3	5838482	A-G	Homo	INTERGENIC
SBS	Chr3	11271752	C-T	Hetero	INTERGENIC
SBS	Chr3	14845966	G-A	Hetero	INTERGENIC
SBS	Chr3	24364575	C-T	Hetero	INTERGENIC
SBS	Chr3	26424450	A-C	Hetero	UTR_3_PRIME
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	31001208	G-C	Hetero	INTRON
SBS	Chr3	31028847	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr3	36499750	G-A	Hetero	INTERGENIC
SBS	Chr4	7996500	A-T	Hetero	INTERGENIC
SBS	Chr4	9165725	C-T	Homo	INTERGENIC
SBS	Chr4	11401307	C-T	Hetero	INTERGENIC
SBS	Chr4	32307674	G-A	Hetero	INTRON
SBS	Chr4	33654603	G-A	Hetero	INTERGENIC
SBS	Chr5	13045461	T-C	Hetero	INTRON
SBS	Chr5	25719238	A-T	Homo	INTERGENIC
SBS	Chr5	26030023	C-A	Homo	INTERGENIC
SBS	Chr6	3133677	G-C	Hetero	INTRON
SBS	Chr6	12207078	T-G	Hetero	INTERGENIC
SBS	Chr6	21865850	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	28910610	T-G	Homo	INTRON
SBS	Chr7	2505519	G-A	Hetero	INTERGENIC
SBS	Chr7	3005063	A-T	Hetero	INTERGENIC
SBS	Chr7	9162361	C-T	Homo	INTERGENIC
SBS	Chr7	22991555	G-A	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr8	2316900	C-T	Hetero	INTERGENIC
SBS	Chr8	4191651	A-T	Hetero	INTERGENIC
SBS	Chr8	4191654	T-C	Hetero	INTERGENIC
SBS	Chr8	11153702	G-A	Homo	INTERGENIC
SBS	Chr8	19378930	A-T	Hetero	INTERGENIC
SBS	Chr8	19378931	A-T	Hetero	INTERGENIC
SBS	Chr10	1560489	T-A	Homo	INTERGENIC
SBS	Chr10	8150453	C-T	Homo	INTERGENIC
SBS	Chr10	10168960	T-G	Homo	INTERGENIC
SBS	Chr10	13761155	G-A	Homo	INTRON
SBS	Chr10	14329007	C-T	Hetero	INTERGENIC
SBS	Chr10	14896896	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g092801
SBS	Chr11	5316520	C-T	Homo	INTRON
SBS	Chr11	5381595	C-T	Hetero	INTERGENIC
SBS	Chr11	25568059	G-A	Homo	INTERGENIC
SBS	Chr12	10576506	G-T	Hetero	INTERGENIC
SBS	Chr12	11121275	G-A	Hetero	INTERGENIC
SBS	Chr12	15501932	A-C	Hetero	INTERGENIC
SBS	Chr12	16800120	G-T	Hetero	INTERGENIC
SBS	Chr12	19735691	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	948797	948814	17
Deletion	Chr7	2090306	2090310	4
Deletion	Chr7	6164549	6164561	12
Deletion	Chr11	7977670	7977672	2
Deletion	Chr10	10029113	10029115	2
Deletion	Chr4	10192415	10192417	2
Deletion	Chr9	10270229	10270230	1
Deletion	Chr8	14025498	14025505	7
Deletion	Chr5	15600001	15662000	61999	4
Deletion	Chr4	16859850	16859851	1
Deletion	Chr4	16920147	16920152	5
Deletion	Chr7	22497004	22497005	1
Deletion	Chr5	25660214	25660215	1
Deletion	Chr4	26103326	26103341	15
Deletion	Chr7	27712989	27712990	1
Deletion	Chr3	30118086	30118089	3	OsKitaake03g315600
Deletion	Chr1	31471872	31471884	12	OsKitaake01g315800
Deletion	Chr2	33385001	33393000	7999	2
Deletion	Chr4	35835936	35835937	1
Deletion	Chr1	41695986	41695994	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4729942	4758540
Inversion	Chr3	4729945	4758542
Inversion	Chr1	28930718	29069058	2
Inversion	Chr1	28930721	29069069	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes