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Mutant Information

Mutant Name	FN3222-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3222-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20038492 C-T Hetero INTERGENIC
SBS Chr1 43542314 C-T Hetero UTR_3_PRIME
SBS Chr2 1933651 G-T Hetero INTERGENIC
SBS Chr2 1933652 G-T Hetero INTERGENIC
SBS Chr2 7411203 A-G Hetero INTERGENIC
SBS Chr2 8422257 G-T Hetero INTRON
SBS Chr2 8434088 A-T Hetero INTERGENIC
SBS Chr2 13587386 A-G Hetero INTERGENIC
SBS Chr2 22761860 G-A Hetero INTERGENIC
SBS Chr3 5904974 C-T Hetero UTR_3_PRIME
SBS Chr3 33586648 T-C Hetero INTERGENIC
SBS Chr3 36901922 T-A Hetero INTERGENIC
SBS Chr4 8954203 A-T Hetero INTERGENIC
SBS Chr4 13883243 A-G Hetero INTERGENIC
SBS Chr4 14773760 A-G Hetero INTERGENIC
SBS Chr4 22003820 T-G Hetero INTERGENIC
SBS Chr4 30249050 G-A Hetero INTERGENIC
SBS Chr4 33393370 T-G Hetero INTRON
SBS Chr4 35960926 G-A Hetero INTERGENIC
SBS Chr4 36110558 T-G Hetero INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr6 1631274 C-T Hetero UTR_3_PRIME
SBS Chr6 4642899 A-T Hetero INTERGENIC
SBS Chr6 7683497 T-G Hetero INTERGENIC
SBS Chr6 8645360 T-A Hetero INTERGENIC
SBS Chr6 14957309 C-A Hetero INTERGENIC
SBS Chr6 19717843 A-T Hetero INTERGENIC
SBS Chr6 23363607 G-C Hetero INTERGENIC
SBS Chr6 23798728 C-T Hetero INTRON
SBS Chr6 25893270 G-A Hetero INTERGENIC
SBS Chr7 8138984 G-C Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 15644824 A-G Hetero INTERGENIC
SBS Chr7 27259933 G-C Hetero INTERGENIC
SBS Chr8 13423906 C-G Hetero INTERGENIC
SBS Chr8 20550874 G-T Hetero INTERGENIC
SBS Chr9 8050466 G-A Hetero INTERGENIC
SBS Chr9 21508360 C-T Hetero INTERGENIC
SBS Chr10 7690592 G-C Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 16953415 G-T Hetero INTERGENIC
SBS Chr10 20396666 G-A Hetero INTRON
SBS Chr11 7440658 T-C Hetero INTERGENIC
SBS Chr11 8880412 A-G Hetero INTERGENIC
SBS Chr11 9971189 C-A Hetero INTERGENIC
SBS Chr11 13324627 G-A Hetero INTERGENIC
SBS Chr11 14228995 C-T Hetero INTERGENIC
SBS Chr11 24913726 T-G Hetero INTERGENIC
SBS Chr11 25882536 G-A Hetero INTERGENIC
SBS Chr12 517322 C-T Hetero INTERGENIC
SBS Chr12 7280921 A-G Hetero INTERGENIC
SBS Chr12 8553696 G-A Hetero INTERGENIC
SBS Chr12 12655834 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1309103 1309105 2
Deletion Chr12 5027001 5058000 30999 3
Deletion Chr3 6449819 6449820 1
Deletion Chr3 9545954 9545955 1
Deletion Chr4 12096224 12096229 5
Deletion Chr11 12459798 12459799 1
Deletion Chr5 17828464 17828467 3
Deletion Chr9 21164001 21218000 53999 9
Deletion Chr9 21223001 21266000 42999 2
Deletion Chr5 22809061 22809067 6
Deletion Chr11 23330244 23330254 10
Deletion Chr6 25541486 25541489 3
Deletion Chr4 34162708 34162709 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5361072 5361075 2
Insertion Chr3 7410115 7410118 2
Insertion Chr9 5970681 5970684 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1955513 2105917
Inversion Chr7 1955515 2105917
Inversion Chr11 8055398 8946249 OsKitaake11g088700
Inversion Chr11 8931355 8946146
Inversion Chr8 16951935 16960654 OsKitaake08g128900
Inversion Chr8 16951936 16960655 OsKitaake08g128900

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1300402 Chr5 13950662
Translocation Chr2 4116398 Chr1 7273159
Translocation Chr2 4116862 Chr1 6054877 OsKitaake01g077200
Translocation Chr12 5029244 Chr6 1639228
Translocation Chr12 5175391 Chr6 1474768 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20038492	C-T	Hetero	INTERGENIC
SBS	Chr1	43542314	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	1933651	G-T	Hetero	INTERGENIC
SBS	Chr2	1933652	G-T	Hetero	INTERGENIC
SBS	Chr2	7411203	A-G	Hetero	INTERGENIC
SBS	Chr2	8422257	G-T	Hetero	INTRON
SBS	Chr2	8434088	A-T	Hetero	INTERGENIC
SBS	Chr2	13587386	A-G	Hetero	INTERGENIC
SBS	Chr2	22761860	G-A	Hetero	INTERGENIC
SBS	Chr3	5904974	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	33586648	T-C	Hetero	INTERGENIC
SBS	Chr3	36901922	T-A	Hetero	INTERGENIC
SBS	Chr4	8954203	A-T	Hetero	INTERGENIC
SBS	Chr4	13883243	A-G	Hetero	INTERGENIC
SBS	Chr4	14773760	A-G	Hetero	INTERGENIC
SBS	Chr4	22003820	T-G	Hetero	INTERGENIC
SBS	Chr4	30249050	G-A	Hetero	INTERGENIC
SBS	Chr4	33393370	T-G	Hetero	INTRON
SBS	Chr4	35960926	G-A	Hetero	INTERGENIC
SBS	Chr4	36110558	T-G	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr6	1631274	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	4642899	A-T	Hetero	INTERGENIC
SBS	Chr6	7683497	T-G	Hetero	INTERGENIC
SBS	Chr6	8645360	T-A	Hetero	INTERGENIC
SBS	Chr6	14957309	C-A	Hetero	INTERGENIC
SBS	Chr6	19717843	A-T	Hetero	INTERGENIC
SBS	Chr6	23363607	G-C	Hetero	INTERGENIC
SBS	Chr6	23798728	C-T	Hetero	INTRON
SBS	Chr6	25893270	G-A	Hetero	INTERGENIC
SBS	Chr7	8138984	G-C	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	15644824	A-G	Hetero	INTERGENIC
SBS	Chr7	27259933	G-C	Hetero	INTERGENIC
SBS	Chr8	13423906	C-G	Hetero	INTERGENIC
SBS	Chr8	20550874	G-T	Hetero	INTERGENIC
SBS	Chr9	8050466	G-A	Hetero	INTERGENIC
SBS	Chr9	21508360	C-T	Hetero	INTERGENIC
SBS	Chr10	7690592	G-C	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	16953415	G-T	Hetero	INTERGENIC
SBS	Chr10	20396666	G-A	Hetero	INTRON
SBS	Chr11	7440658	T-C	Hetero	INTERGENIC
SBS	Chr11	8880412	A-G	Hetero	INTERGENIC
SBS	Chr11	9971189	C-A	Hetero	INTERGENIC
SBS	Chr11	13324627	G-A	Hetero	INTERGENIC
SBS	Chr11	14228995	C-T	Hetero	INTERGENIC
SBS	Chr11	24913726	T-G	Hetero	INTERGENIC
SBS	Chr11	25882536	G-A	Hetero	INTERGENIC
SBS	Chr12	517322	C-T	Hetero	INTERGENIC
SBS	Chr12	7280921	A-G	Hetero	INTERGENIC
SBS	Chr12	8553696	G-A	Hetero	INTERGENIC
SBS	Chr12	12655834	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1309103	1309105	2
Deletion	Chr12	5027001	5058000	30999	3
Deletion	Chr3	6449819	6449820	1
Deletion	Chr3	9545954	9545955	1
Deletion	Chr4	12096224	12096229	5
Deletion	Chr11	12459798	12459799	1
Deletion	Chr5	17828464	17828467	3
Deletion	Chr9	21164001	21218000	53999	9
Deletion	Chr9	21223001	21266000	42999	2
Deletion	Chr5	22809061	22809067	6
Deletion	Chr11	23330244	23330254	10
Deletion	Chr6	25541486	25541489	3
Deletion	Chr4	34162708	34162709	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1955513	2105917
Inversion	Chr7	1955515	2105917
Inversion	Chr11	8055398	8946249	OsKitaake11g088700
Inversion	Chr11	8931355	8946146
Inversion	Chr8	16951935	16960654	OsKitaake08g128900
Inversion	Chr8	16951936	16960655	OsKitaake08g128900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes