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| Mutant Information |
|---|
| Mutant Name | FN3223-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3223-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13178319 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14633646 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 22419454 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 33394014 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 1696158 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g026700 |
| SBS | Chr2 | 1931646 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7162736 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15369691 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16427067 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25441213 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 35887642 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 19664205 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g155100 |
| SBS | Chr6 | 11167429 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5642189 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 6120651 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 13014867 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 14592809 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 368741 | A-T | Homo | INTRON | |
| SBS | Chr8 | 4840877 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16413605 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20089934 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7252777 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 10898736 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17630698 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18279837 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 18743906 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 11663371 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g069501 |
| SBS | Chr11 | 5237722 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13842334 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14685118 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16030203 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8931899 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14645223 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15464255 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18159458 | C-T | Hetero | STOP_GAINED | OsKitaake12g133500 |
| SBS | Chr12 | 20216660 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22676854 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26249957 | A-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2145466 | 2145483 | 17 | |
| Deletion | Chr1 | 3226108 | 3226200 | 92 | |
| Deletion | Chr5 | 8499206 | 8499217 | 11 | |
| Deletion | Chr3 | 15631291 | 15631292 | 1 | |
| Deletion | Chr1 | 15876661 | 15876684 | 23 | |
| Deletion | Chr4 | 20610990 | 20610996 | 6 | OsKitaake04g111000 |
| Deletion | Chr11 | 21396119 | 21396120 | 1 | |
| Deletion | Chr3 | 23487932 | 23487938 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 24664663 | 24664665 | 1 | |
| Insertion | Chr8 | 2992859 | 2992862 | 2 | |
| Insertion | Chr10 | 15896984 | 15896987 | 2 | |
| Insertion | Chr8 | 8067714 | 8067716 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 13316496 | 13597231 | OsKitaake11g115550 |
| Inversion | Chr11 | 13316506 | 13597305 | OsKitaake11g115550 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 18756565 | Chr2 | 10936938 | OsKitaake02g127800 |