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| Mutant Information |
|---|
| Mutant Name | FN3226-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3226-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4290732 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 4481621 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 7237472 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 7640867 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 8478902 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23219124 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 675693 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 21989897 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 25424166 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 13132596 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28030216 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32729659 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 8475219 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23735181 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28274957 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1259377 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18224046 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 21559967 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g180100 |
| SBS | Chr7 | 25639225 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 13763280 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 24322976 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26542003 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g213300 |
| SBS | Chr9 | 12207509 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 15721809 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8925564 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 555905 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12668227 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27091956 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 3835052 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21429368 | A-G | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 5354757 | 5354758 | 1 | |
| Deletion | Chr9 | 6027270 | 6027273 | 3 | |
| Deletion | Chr2 | 7480821 | 7480823 | 2 | |
| Deletion | Chr7 | 7942411 | 7942413 | 2 | |
| Deletion | Chr2 | 19861704 | 19861708 | 4 | OsKitaake02g193900 |
| Deletion | Chr5 | 27035007 | 27035022 | 15 | OsKitaake05g242300 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 18495365 | 18495368 | 2 | |
| Insertion | Chr6 | 30677758 | 30677761 | 2 | |
| Insertion | Chr7 | 24524126 | 24524129 | 2 | |
| Insertion | Chr8 | 3903362 | 3903366 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 3205731 | 3530808 | 2 |
| Inversion | Chr2 | 3205737 | 3530814 | 2 |
| Inversion | Chr12 | 25182815 | 26086374 | OsKitaake12g204600 |
| Inversion | Chr12 | 25182817 | 26086376 | OsKitaake12g204600 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 24645217 | Chr4 | 35508187 | |
| Translocation | Chr7 | 24645589 | Chr4 | 35508174 |