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Mutant Information

Mutant Name	FN3227-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3227-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1962069 A-C Hetero INTERGENIC
SBS Chr1 31470595 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g315800
SBS Chr2 3634298 T-C Homo INTERGENIC
SBS Chr2 12820418 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 36502967 A-G Homo INTERGENIC
SBS Chr3 1050834 G-C Hetero INTRON
SBS Chr3 7427535 A-T Homo INTERGENIC
SBS Chr3 26200112 G-A Hetero INTERGENIC
SBS Chr4 10357068 T-C Hetero INTERGENIC
SBS Chr4 13834068 C-T Hetero INTERGENIC
SBS Chr5 8654767 C-T Hetero SPLICE_SITE_REGION
SBS Chr5 9596005 G-A Hetero INTRON
SBS Chr5 10604991 T-G Hetero INTRON
SBS Chr5 16592342 T-A Hetero INTERGENIC
SBS Chr5 20570253 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g164000
SBS Chr5 28442844 T-C Hetero INTRON
SBS Chr5 28892803 T-A Hetero INTERGENIC
SBS Chr6 6925693 G-T Hetero UTR_3_PRIME
SBS Chr6 10570025 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g118700
SBS Chr6 13226116 T-C Hetero INTERGENIC
SBS Chr6 17273978 C-A Hetero INTERGENIC
SBS Chr7 9292414 G-A Hetero INTERGENIC
SBS Chr7 11975204 G-A Hetero INTERGENIC
SBS Chr7 14787058 A-G Hetero INTERGENIC
SBS Chr7 15958538 G-A Hetero INTERGENIC
SBS Chr7 15958543 C-A Hetero INTERGENIC
SBS Chr7 19462113 T-C Hetero INTERGENIC
SBS Chr7 28491366 G-T Hetero INTERGENIC
SBS Chr7 28491367 A-T Hetero INTERGENIC
SBS Chr8 6002634 A-G Hetero INTERGENIC
SBS Chr8 21471197 A-G Homo INTRON
SBS Chr9 795819 C-T Hetero INTERGENIC
SBS Chr9 3410708 T-C Homo INTRON
SBS Chr9 7225179 A-C Hetero INTERGENIC
SBS Chr10 3137073 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g025500
SBS Chr10 20338878 A-G Hetero INTRON
SBS Chr11 5486315 C-T Hetero INTERGENIC
SBS Chr11 15221903 C-T Hetero INTERGENIC
SBS Chr11 16086001 G-C Homo INTERGENIC
SBS Chr11 21526448 C-T Hetero UTR_3_PRIME
SBS Chr12 3231575 A-T Homo INTERGENIC
SBS Chr12 6232935 T-G Homo INTERGENIC
SBS Chr12 11509743 C-T Homo INTERGENIC
SBS Chr12 26011210 G-A Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4586611 4586735 124
Deletion Chr1 12065234 12065236 2
Deletion Chr9 13106010 13106018 8
Deletion Chr6 14816260 14816262 2
Deletion Chr2 18232451 18232453 2
Deletion Chr1 18724297 18724300 3
Deletion Chr11 19025760 19025767 7
Deletion Chr11 19830753 19830762 9
Deletion Chr1 20692622 20692624 2 OsKitaake01g202700
Deletion Chr6 26394954 26394955 1
Deletion Chr1 29416178 29416180 2
Deletion Chr2 32423092 32423094 2
Deletion Chr3 35935890 35935897 7
Deletion Chr1 40730774 40730775 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16950919 16950922 2
Insertion Chr2 6852794 6852797 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7032696 7489655
Inversion Chr4 7032700 7489657
Inversion Chr3 19472769 19766098
Inversion Chr3 19472780 19766108

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 10698019 Chr1 35337789 OsKitaake01g372700
Translocation Chr6 10698045 Chr1 35402588 OsKitaake01g373400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1962069	A-C	Hetero	INTERGENIC
SBS	Chr1	31470595	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g315800
SBS	Chr2	3634298	T-C	Homo	INTERGENIC
SBS	Chr2	12820418	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	36502967	A-G	Homo	INTERGENIC
SBS	Chr3	1050834	G-C	Hetero	INTRON
SBS	Chr3	7427535	A-T	Homo	INTERGENIC
SBS	Chr3	26200112	G-A	Hetero	INTERGENIC
SBS	Chr4	10357068	T-C	Hetero	INTERGENIC
SBS	Chr4	13834068	C-T	Hetero	INTERGENIC
SBS	Chr5	8654767	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr5	9596005	G-A	Hetero	INTRON
SBS	Chr5	10604991	T-G	Hetero	INTRON
SBS	Chr5	16592342	T-A	Hetero	INTERGENIC
SBS	Chr5	20570253	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g164000
SBS	Chr5	28442844	T-C	Hetero	INTRON
SBS	Chr5	28892803	T-A	Hetero	INTERGENIC
SBS	Chr6	6925693	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	10570025	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g118700
SBS	Chr6	13226116	T-C	Hetero	INTERGENIC
SBS	Chr6	17273978	C-A	Hetero	INTERGENIC
SBS	Chr7	9292414	G-A	Hetero	INTERGENIC
SBS	Chr7	11975204	G-A	Hetero	INTERGENIC
SBS	Chr7	14787058	A-G	Hetero	INTERGENIC
SBS	Chr7	15958538	G-A	Hetero	INTERGENIC
SBS	Chr7	15958543	C-A	Hetero	INTERGENIC
SBS	Chr7	19462113	T-C	Hetero	INTERGENIC
SBS	Chr7	28491366	G-T	Hetero	INTERGENIC
SBS	Chr7	28491367	A-T	Hetero	INTERGENIC
SBS	Chr8	6002634	A-G	Hetero	INTERGENIC
SBS	Chr8	21471197	A-G	Homo	INTRON
SBS	Chr9	795819	C-T	Hetero	INTERGENIC
SBS	Chr9	3410708	T-C	Homo	INTRON
SBS	Chr9	7225179	A-C	Hetero	INTERGENIC
SBS	Chr10	3137073	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g025500
SBS	Chr10	20338878	A-G	Hetero	INTRON
SBS	Chr11	5486315	C-T	Hetero	INTERGENIC
SBS	Chr11	15221903	C-T	Hetero	INTERGENIC
SBS	Chr11	16086001	G-C	Homo	INTERGENIC
SBS	Chr11	21526448	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	3231575	A-T	Homo	INTERGENIC
SBS	Chr12	6232935	T-G	Homo	INTERGENIC
SBS	Chr12	11509743	C-T	Homo	INTERGENIC
SBS	Chr12	26011210	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4586611	4586735	124
Deletion	Chr1	12065234	12065236	2
Deletion	Chr9	13106010	13106018	8
Deletion	Chr6	14816260	14816262	2
Deletion	Chr2	18232451	18232453	2
Deletion	Chr1	18724297	18724300	3
Deletion	Chr11	19025760	19025767	7
Deletion	Chr11	19830753	19830762	9
Deletion	Chr1	20692622	20692624	2	OsKitaake01g202700
Deletion	Chr6	26394954	26394955	1
Deletion	Chr1	29416178	29416180	2
Deletion	Chr2	32423092	32423094	2
Deletion	Chr3	35935890	35935897	7
Deletion	Chr1	40730774	40730775	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7032696	7489655
Inversion	Chr4	7032700	7489657
Inversion	Chr3	19472769	19766098
Inversion	Chr3	19472780	19766108

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes