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Mutant Information

Mutant Name	FN3228-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3228-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3080711 C-T Homo INTERGENIC
SBS Chr1 10175439 C-T Hetero INTERGENIC
SBS Chr1 36414821 C-T Hetero INTERGENIC
SBS Chr1 41722266 C-T Hetero INTERGENIC
SBS Chr2 4886057 G-A Hetero INTRON
SBS Chr2 8156357 G-A Hetero INTERGENIC
SBS Chr2 16825583 T-C Hetero INTERGENIC
SBS Chr2 27461743 T-C Hetero INTERGENIC
SBS Chr3 3441777 T-A Hetero INTERGENIC
SBS Chr3 7959472 C-T Hetero INTERGENIC
SBS Chr3 35202554 A-T Homo INTERGENIC
SBS Chr4 6753389 G-A Hetero UTR_3_PRIME
SBS Chr4 9470199 G-A Hetero INTERGENIC
SBS Chr4 13739554 C-G Hetero INTERGENIC
SBS Chr4 25821854 A-G Hetero INTERGENIC
SBS Chr5 11566952 C-T Hetero INTERGENIC
SBS Chr5 11994056 C-T Hetero INTERGENIC
SBS Chr5 18925306 G-C Homo INTERGENIC
SBS Chr5 26692996 C-A Hetero INTERGENIC
SBS Chr6 6825485 A-T Hetero INTRON
SBS Chr6 7833123 T-A Hetero INTRON
SBS Chr7 14913447 G-C Hetero INTERGENIC
SBS Chr7 19276025 T-C Hetero INTERGENIC
SBS Chr8 1785220 A-G Hetero INTERGENIC
SBS Chr8 12592763 C-T Hetero INTERGENIC
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr9 4670478 C-T Hetero INTERGENIC
SBS Chr10 9759523 C-A Hetero INTERGENIC
SBS Chr10 11602099 G-T Hetero INTERGENIC
SBS Chr11 1152246 G-A Homo SYNONYMOUS_CODING
SBS Chr11 8542469 C-T Hetero INTERGENIC
SBS Chr11 10223972 T-A Hetero INTERGENIC
SBS Chr11 10223973 C-A Hetero INTERGENIC
SBS Chr11 16242486 C-T Hetero INTERGENIC
SBS Chr11 16452175 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 21337751 C-T Hetero INTRON
SBS Chr11 21766915 T-A Homo INTERGENIC
SBS Chr11 21766916 C-A Homo INTERGENIC
SBS Chr11 21766928 T-C Homo INTERGENIC
SBS Chr11 26769475 C-T Hetero INTERGENIC
SBS Chr12 2220845 A-G Hetero INTERGENIC
SBS Chr12 9611462 G-T Hetero INTERGENIC
SBS Chr12 13375565 G-A Hetero INTERGENIC
SBS Chr12 17250972 T-G Hetero INTERGENIC
SBS Chr12 19019368 C-T Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1466289 1466293 4
Deletion Chr12 4934090 4934092 2
Deletion Chr3 7845123 7845124 1
Deletion Chr10 8849930 8849933 3
Deletion Chr8 10369236 10369244 8
Deletion Chr1 10986741 10986742 1
Deletion Chr3 13308526 13308538 12
Deletion Chr5 14446562 14446570 8
Deletion Chr7 19325001 19351000 25999 3
Deletion Chr9 20264762 20264764 2
Deletion Chr6 30143225 30143228 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21140482 21140485 2
Insertion Chr7 14345184 14345186 1

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4689882 Chr1 12234295 OsKitaake08g053400
Translocation Chr8 4689912 Chr7 23031851 3
Translocation Chr8 7560674 Chr7 23168352 2
Translocation Chr8 7560676 Chr1 12235441 OsKitaake08g070600
Translocation Chr12 10037473 Chr7 25476745
Translocation Chr8 25157986 Chr4 8550664
Translocation Chr8 25158000 Chr4 8550399

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3080711	C-T	Homo	INTERGENIC
SBS	Chr1	10175439	C-T	Hetero	INTERGENIC
SBS	Chr1	36414821	C-T	Hetero	INTERGENIC
SBS	Chr1	41722266	C-T	Hetero	INTERGENIC
SBS	Chr2	4886057	G-A	Hetero	INTRON
SBS	Chr2	8156357	G-A	Hetero	INTERGENIC
SBS	Chr2	16825583	T-C	Hetero	INTERGENIC
SBS	Chr2	27461743	T-C	Hetero	INTERGENIC
SBS	Chr3	3441777	T-A	Hetero	INTERGENIC
SBS	Chr3	7959472	C-T	Hetero	INTERGENIC
SBS	Chr3	35202554	A-T	Homo	INTERGENIC
SBS	Chr4	6753389	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	9470199	G-A	Hetero	INTERGENIC
SBS	Chr4	13739554	C-G	Hetero	INTERGENIC
SBS	Chr4	25821854	A-G	Hetero	INTERGENIC
SBS	Chr5	11566952	C-T	Hetero	INTERGENIC
SBS	Chr5	11994056	C-T	Hetero	INTERGENIC
SBS	Chr5	18925306	G-C	Homo	INTERGENIC
SBS	Chr5	26692996	C-A	Hetero	INTERGENIC
SBS	Chr6	6825485	A-T	Hetero	INTRON
SBS	Chr6	7833123	T-A	Hetero	INTRON
SBS	Chr7	14913447	G-C	Hetero	INTERGENIC
SBS	Chr7	19276025	T-C	Hetero	INTERGENIC
SBS	Chr8	1785220	A-G	Hetero	INTERGENIC
SBS	Chr8	12592763	C-T	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr9	4670478	C-T	Hetero	INTERGENIC
SBS	Chr10	9759523	C-A	Hetero	INTERGENIC
SBS	Chr10	11602099	G-T	Hetero	INTERGENIC
SBS	Chr11	1152246	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	8542469	C-T	Hetero	INTERGENIC
SBS	Chr11	10223972	T-A	Hetero	INTERGENIC
SBS	Chr11	10223973	C-A	Hetero	INTERGENIC
SBS	Chr11	16242486	C-T	Hetero	INTERGENIC
SBS	Chr11	16452175	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	21337751	C-T	Hetero	INTRON
SBS	Chr11	21766915	T-A	Homo	INTERGENIC
SBS	Chr11	21766916	C-A	Homo	INTERGENIC
SBS	Chr11	21766928	T-C	Homo	INTERGENIC
SBS	Chr11	26769475	C-T	Hetero	INTERGENIC
SBS	Chr12	2220845	A-G	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Hetero	INTERGENIC
SBS	Chr12	13375565	G-A	Hetero	INTERGENIC
SBS	Chr12	17250972	T-G	Hetero	INTERGENIC
SBS	Chr12	19019368	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1466289	1466293	4
Deletion	Chr12	4934090	4934092	2
Deletion	Chr3	7845123	7845124	1
Deletion	Chr10	8849930	8849933	3
Deletion	Chr8	10369236	10369244	8
Deletion	Chr1	10986741	10986742	1
Deletion	Chr3	13308526	13308538	12
Deletion	Chr5	14446562	14446570	8
Deletion	Chr7	19325001	19351000	25999	3
Deletion	Chr9	20264762	20264764	2
Deletion	Chr6	30143225	30143228	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4689882	Chr1	12234295	OsKitaake08g053400
Translocation	Chr8	4689912	Chr7	23031851	3
Translocation	Chr8	7560674	Chr7	23168352	2
Translocation	Chr8	7560676	Chr1	12235441	OsKitaake08g070600
Translocation	Chr12	10037473	Chr7	25476745
Translocation	Chr8	25157986	Chr4	8550664
Translocation	Chr8	25158000	Chr4	8550399

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes