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Mutant Information

Mutant Name	FN3229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3229-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 321763 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g004400
SBS Chr1 10217460 T-A Hetero INTERGENIC
SBS Chr1 17364826 A-G Hetero INTERGENIC
SBS Chr1 26510647 G-A Hetero INTERGENIC
SBS Chr2 6911258 A-G Hetero INTRON
SBS Chr2 9577829 A-G Hetero INTERGENIC
SBS Chr2 15941486 C-T Hetero INTERGENIC
SBS Chr2 18048771 A-T Hetero INTERGENIC
SBS Chr2 18883345 G-A Hetero INTERGENIC
SBS Chr2 18989034 C-T Hetero INTRON
SBS Chr2 19138209 T-G Hetero INTERGENIC
SBS Chr2 35399630 T-C Hetero INTERGENIC
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 6295380 G-A Hetero INTERGENIC
SBS Chr3 19225004 C-G Hetero INTERGENIC
SBS Chr3 20429908 G-A Homo INTERGENIC
SBS Chr3 27213684 C-T Hetero INTERGENIC
SBS Chr4 7042929 G-A Hetero INTERGENIC
SBS Chr4 12551616 G-A Hetero INTERGENIC
SBS Chr5 80394 A-C Hetero INTERGENIC
SBS Chr5 3389459 C-T Hetero INTERGENIC
SBS Chr5 4243372 C-A Hetero INTERGENIC
SBS Chr5 19740556 G-A Hetero INTERGENIC
SBS Chr6 8969948 G-A Hetero INTRON
SBS Chr6 18102781 G-T Hetero INTERGENIC
SBS Chr6 18102785 A-T Hetero INTERGENIC
SBS Chr6 19384251 C-T Homo INTERGENIC
SBS Chr6 26365888 G-C Hetero INTERGENIC
SBS Chr7 36543 A-G Hetero INTERGENIC
SBS Chr7 7174965 C-T Homo INTERGENIC
SBS Chr7 21828538 G-A Homo INTERGENIC
SBS Chr7 25479519 G-A Homo INTRON
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 20173291 A-T Hetero INTERGENIC
SBS Chr10 10165306 G-A Hetero INTERGENIC
SBS Chr10 13721018 T-A Hetero INTERGENIC
SBS Chr11 2372141 A-G Hetero INTERGENIC
SBS Chr11 5041424 G-A Hetero INTERGENIC
SBS Chr11 8555784 C-T Hetero INTERGENIC
SBS Chr11 18344250 C-T Homo INTERGENIC
SBS Chr11 20478496 G-T Hetero INTERGENIC
SBS Chr12 11246544 G-A Hetero INTERGENIC
SBS Chr12 22663978 A-G Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 6184031 6184047 16
Deletion Chr3 6708021 6708023 2
Deletion Chr10 8602673 8602684 11
Deletion Chr7 11183517 11183552 35
Deletion Chr10 15567452 15567453 1
Deletion Chr6 19674154 19674157 3
Deletion Chr3 23756543 23756554 11 OsKitaake03g255300

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr4 18973708 18973711 2
Insertion Chr5 56230 56233 2
Insertion Chr8 21221978 21221981 2
Insertion Chr12 809135 809139 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 7524409 8306375 OsKitaake06g104200
Inversion Chr6 7525132 8306381 2
Inversion Chr3 27237989 27824015
Inversion Chr3 27238004 27824012

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	321763	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g004400
SBS	Chr1	10217460	T-A	Hetero	INTERGENIC
SBS	Chr1	17364826	A-G	Hetero	INTERGENIC
SBS	Chr1	26510647	G-A	Hetero	INTERGENIC
SBS	Chr2	6911258	A-G	Hetero	INTRON
SBS	Chr2	9577829	A-G	Hetero	INTERGENIC
SBS	Chr2	15941486	C-T	Hetero	INTERGENIC
SBS	Chr2	18048771	A-T	Hetero	INTERGENIC
SBS	Chr2	18883345	G-A	Hetero	INTERGENIC
SBS	Chr2	18989034	C-T	Hetero	INTRON
SBS	Chr2	19138209	T-G	Hetero	INTERGENIC
SBS	Chr2	35399630	T-C	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	6295380	G-A	Hetero	INTERGENIC
SBS	Chr3	19225004	C-G	Hetero	INTERGENIC
SBS	Chr3	20429908	G-A	Homo	INTERGENIC
SBS	Chr3	27213684	C-T	Hetero	INTERGENIC
SBS	Chr4	7042929	G-A	Hetero	INTERGENIC
SBS	Chr4	12551616	G-A	Hetero	INTERGENIC
SBS	Chr5	80394	A-C	Hetero	INTERGENIC
SBS	Chr5	3389459	C-T	Hetero	INTERGENIC
SBS	Chr5	4243372	C-A	Hetero	INTERGENIC
SBS	Chr5	19740556	G-A	Hetero	INTERGENIC
SBS	Chr6	8969948	G-A	Hetero	INTRON
SBS	Chr6	18102781	G-T	Hetero	INTERGENIC
SBS	Chr6	18102785	A-T	Hetero	INTERGENIC
SBS	Chr6	19384251	C-T	Homo	INTERGENIC
SBS	Chr6	26365888	G-C	Hetero	INTERGENIC
SBS	Chr7	36543	A-G	Hetero	INTERGENIC
SBS	Chr7	7174965	C-T	Homo	INTERGENIC
SBS	Chr7	21828538	G-A	Homo	INTERGENIC
SBS	Chr7	25479519	G-A	Homo	INTRON
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	20173291	A-T	Hetero	INTERGENIC
SBS	Chr10	10165306	G-A	Hetero	INTERGENIC
SBS	Chr10	13721018	T-A	Hetero	INTERGENIC
SBS	Chr11	2372141	A-G	Hetero	INTERGENIC
SBS	Chr11	5041424	G-A	Hetero	INTERGENIC
SBS	Chr11	8555784	C-T	Hetero	INTERGENIC
SBS	Chr11	18344250	C-T	Homo	INTERGENIC
SBS	Chr11	20478496	G-T	Hetero	INTERGENIC
SBS	Chr12	11246544	G-A	Hetero	INTERGENIC
SBS	Chr12	22663978	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	6184031	6184047	16
Deletion	Chr3	6708021	6708023	2
Deletion	Chr10	8602673	8602684	11
Deletion	Chr7	11183517	11183552	35
Deletion	Chr10	15567452	15567453	1
Deletion	Chr6	19674154	19674157	3
Deletion	Chr3	23756543	23756554	11	OsKitaake03g255300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7524409	8306375	OsKitaake06g104200
Inversion	Chr6	7525132	8306381	2
Inversion	Chr3	27237989	27824015
Inversion	Chr3	27238004	27824012

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes