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Mutant Information

Mutant Name	FN3230-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3230-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1996655 C-T Homo UTR_5_PRIME
SBS Chr1 9632223 G-T Hetero INTERGENIC
SBS Chr1 19111358 G-T Hetero INTERGENIC
SBS Chr1 37715503 A-G Hetero INTERGENIC
SBS Chr2 2415455 G-T Homo INTRON
SBS Chr2 20940221 C-T Hetero INTERGENIC
SBS Chr4 2211613 A-G Hetero INTRON
SBS Chr4 19082781 G-T Hetero INTERGENIC
SBS Chr4 29751870 G-A Hetero INTERGENIC
SBS Chr4 34877036 A-T Hetero INTERGENIC
SBS Chr5 9697938 G-A Homo INTRON
SBS Chr6 19553152 C-T Homo INTERGENIC
SBS Chr7 16774276 G-T Hetero INTERGENIC
SBS Chr8 5736771 G-A Homo INTERGENIC
SBS Chr8 19766526 G-A Homo INTRON
SBS Chr8 19905997 C-T Homo INTERGENIC
SBS Chr8 24908938 G-C Homo INTRON
SBS Chr10 16600 G-C Hetero INTERGENIC
SBS Chr10 9258086 T-G Hetero INTERGENIC
SBS Chr10 24045008 A-G Hetero INTRON
SBS Chr11 10009684 T-A Hetero INTRON
SBS Chr11 17305619 T-C Hetero INTERGENIC
SBS Chr11 19519460 T-A Hetero INTERGENIC
SBS Chr12 3978518 A-T Hetero INTRON
SBS Chr12 5262413 A-T Hetero INTERGENIC
SBS Chr12 21357835 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1321808 1321816 8
Deletion Chr4 2835049 2835053 4
Deletion Chr1 14230011 14230013 2
Deletion Chr8 14940759 14940760 1
Deletion Chr8 22684943 22684947 4
Deletion Chr8 23937952 23937954 2
Deletion Chr11 27004305 27004306 1
Deletion Chr6 28220444 28220446 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3508144 3508149 4
Insertion Chr7 26247975 26247978 2
Insertion Chr10 8707033 8707035 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 11372805 11505112 OsKitaake07g107100
Inversion Chr7 11372825 11505113 OsKitaake07g107100
Inversion Chr1 14645594 15073750

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12329053 Chr5 9307081

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1996655	C-T	Homo	UTR_5_PRIME
SBS	Chr1	9632223	G-T	Hetero	INTERGENIC
SBS	Chr1	19111358	G-T	Hetero	INTERGENIC
SBS	Chr1	37715503	A-G	Hetero	INTERGENIC
SBS	Chr2	2415455	G-T	Homo	INTRON
SBS	Chr2	20940221	C-T	Hetero	INTERGENIC
SBS	Chr4	2211613	A-G	Hetero	INTRON
SBS	Chr4	19082781	G-T	Hetero	INTERGENIC
SBS	Chr4	29751870	G-A	Hetero	INTERGENIC
SBS	Chr4	34877036	A-T	Hetero	INTERGENIC
SBS	Chr5	9697938	G-A	Homo	INTRON
SBS	Chr6	19553152	C-T	Homo	INTERGENIC
SBS	Chr7	16774276	G-T	Hetero	INTERGENIC
SBS	Chr8	5736771	G-A	Homo	INTERGENIC
SBS	Chr8	19766526	G-A	Homo	INTRON
SBS	Chr8	19905997	C-T	Homo	INTERGENIC
SBS	Chr8	24908938	G-C	Homo	INTRON
SBS	Chr10	16600	G-C	Hetero	INTERGENIC
SBS	Chr10	9258086	T-G	Hetero	INTERGENIC
SBS	Chr10	24045008	A-G	Hetero	INTRON
SBS	Chr11	10009684	T-A	Hetero	INTRON
SBS	Chr11	17305619	T-C	Hetero	INTERGENIC
SBS	Chr11	19519460	T-A	Hetero	INTERGENIC
SBS	Chr12	3978518	A-T	Hetero	INTRON
SBS	Chr12	5262413	A-T	Hetero	INTERGENIC
SBS	Chr12	21357835	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1321808	1321816	8
Deletion	Chr4	2835049	2835053	4
Deletion	Chr1	14230011	14230013	2
Deletion	Chr8	14940759	14940760	1
Deletion	Chr8	22684943	22684947	4
Deletion	Chr8	23937952	23937954	2
Deletion	Chr11	27004305	27004306	1
Deletion	Chr6	28220444	28220446	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11372805	11505112	OsKitaake07g107100
Inversion	Chr7	11372825	11505113	OsKitaake07g107100
Inversion	Chr1	14645594	15073750

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes