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Mutant Information

Mutant Name	FN3231-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3231-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35011620 C-A Hetero INTRON
SBS Chr2 11415969 C-A Hetero INTERGENIC
SBS Chr3 19108829 C-T Homo INTERGENIC
SBS Chr3 21246721 C-T Homo INTRON
SBS Chr3 21246722 G-T Homo INTRON
SBS Chr3 21252704 T-A Homo INTRON
SBS Chr3 21252705 C-A Homo INTRON
SBS Chr3 21252706 A-G Homo INTRON
SBS Chr4 5549492 T-A Hetero INTERGENIC
SBS Chr4 9889879 G-A Hetero INTERGENIC
SBS Chr4 12419214 C-T Hetero INTERGENIC
SBS Chr4 18524239 G-A Hetero INTERGENIC
SBS Chr4 20335098 G-A Hetero INTERGENIC
SBS Chr5 25539244 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g223800
SBS Chr7 23694313 T-A Hetero INTERGENIC
SBS Chr9 1873173 G-T Hetero INTERGENIC
SBS Chr9 13195047 G-A Hetero INTERGENIC
SBS Chr9 15148781 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g105700
SBS Chr9 18007288 T-C Hetero INTERGENIC
SBS Chr10 279685 G-A Hetero INTERGENIC
SBS Chr10 9425144 G-A Homo INTRON
SBS Chr11 3573459 G-A Homo INTERGENIC
SBS Chr11 6991243 A-G Hetero INTERGENIC
SBS Chr11 11663720 C-T Hetero INTERGENIC
SBS Chr12 2006484 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g031500
SBS Chr12 12266072 A-T Hetero INTERGENIC
SBS Chr12 12266073 T-G Hetero INTERGENIC
SBS Chr12 12266079 G-A Hetero INTERGENIC
SBS Chr12 24108329 T-A Hetero UTR_3_PRIME

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 567019 567029 10
Deletion Chr8 2607297 2607299 2
Deletion Chr4 4535437 4535439 2
Deletion Chr4 5060992 5060997 5
Deletion Chr12 6165001 6228000 62999 4
Deletion Chr12 7402251 7402255 4
Deletion Chr12 7755091 7755107 16
Deletion Chr8 9253020 9253055 35
Deletion Chr3 16590710 16590718 8
Deletion Chr11 16977263 16977265 2
Deletion Chr6 17810678 17810692 14
Deletion Chr11 19856001 20284000 427999 34
Deletion Chr3 21252563 21252566 3
Deletion Chr3 22316978 22316979 1
Deletion Chr11 22834967 22834978 11
Deletion Chr7 25435427 25435435 8
Deletion Chr2 33575948 33575951 3 OsKitaake02g347200

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13037442 13037445 2
Insertion Chr3 28396907 28396910 2
Insertion Chr10 17824538 17824543 4

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4773223 Chr2 32690564 OsKitaake02g335100
Translocation Chr6 4773542 Chr2 32690578 OsKitaake02g335100
Translocation Chr7 23591523 Chr1 31867596
Translocation Chr7 23591633 Chr1 31867590

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35011620	C-A	Hetero	INTRON
SBS	Chr2	11415969	C-A	Hetero	INTERGENIC
SBS	Chr3	19108829	C-T	Homo	INTERGENIC
SBS	Chr3	21246721	C-T	Homo	INTRON
SBS	Chr3	21246722	G-T	Homo	INTRON
SBS	Chr3	21252704	T-A	Homo	INTRON
SBS	Chr3	21252705	C-A	Homo	INTRON
SBS	Chr3	21252706	A-G	Homo	INTRON
SBS	Chr4	5549492	T-A	Hetero	INTERGENIC
SBS	Chr4	9889879	G-A	Hetero	INTERGENIC
SBS	Chr4	12419214	C-T	Hetero	INTERGENIC
SBS	Chr4	18524239	G-A	Hetero	INTERGENIC
SBS	Chr4	20335098	G-A	Hetero	INTERGENIC
SBS	Chr5	25539244	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g223800
SBS	Chr7	23694313	T-A	Hetero	INTERGENIC
SBS	Chr9	1873173	G-T	Hetero	INTERGENIC
SBS	Chr9	13195047	G-A	Hetero	INTERGENIC
SBS	Chr9	15148781	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g105700
SBS	Chr9	18007288	T-C	Hetero	INTERGENIC
SBS	Chr10	279685	G-A	Hetero	INTERGENIC
SBS	Chr10	9425144	G-A	Homo	INTRON
SBS	Chr11	3573459	G-A	Homo	INTERGENIC
SBS	Chr11	6991243	A-G	Hetero	INTERGENIC
SBS	Chr11	11663720	C-T	Hetero	INTERGENIC
SBS	Chr12	2006484	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g031500
SBS	Chr12	12266072	A-T	Hetero	INTERGENIC
SBS	Chr12	12266073	T-G	Hetero	INTERGENIC
SBS	Chr12	12266079	G-A	Hetero	INTERGENIC
SBS	Chr12	24108329	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	567019	567029	10
Deletion	Chr8	2607297	2607299	2
Deletion	Chr4	4535437	4535439	2
Deletion	Chr4	5060992	5060997	5
Deletion	Chr12	6165001	6228000	62999	4
Deletion	Chr12	7402251	7402255	4
Deletion	Chr12	7755091	7755107	16
Deletion	Chr8	9253020	9253055	35
Deletion	Chr3	16590710	16590718	8
Deletion	Chr11	16977263	16977265	2
Deletion	Chr6	17810678	17810692	14
Deletion	Chr11	19856001	20284000	427999	34
Deletion	Chr3	21252563	21252566	3
Deletion	Chr3	22316978	22316979	1
Deletion	Chr11	22834967	22834978	11
Deletion	Chr7	25435427	25435435	8
Deletion	Chr2	33575948	33575951	3	OsKitaake02g347200

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4773223	Chr2	32690564	OsKitaake02g335100
Translocation	Chr6	4773542	Chr2	32690578	OsKitaake02g335100
Translocation	Chr7	23591523	Chr1	31867596
Translocation	Chr7	23591633	Chr1	31867590

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes