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| Mutant Information |
|---|
| Mutant Name | FN3232-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3232-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13244826 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13916857 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 17631495 | A-T | Homo | INTRON | |
| SBS | Chr1 | 19925310 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 31403035 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 37564841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 11917459 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13418123 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17854991 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 12300709 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23983727 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24415556 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 37471714 | C-T | Homo | INTRON | |
| SBS | Chr4 | 2365979 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 16660328 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 5494213 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 14628340 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15501759 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 16357067 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23582682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24272375 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3156962 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 3869038 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14828306 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 21365422 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3028194 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6311199 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10421138 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 19084984 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g137200 |
| SBS | Chr11 | 10561746 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 19878516 | T-A | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 165635 | 165637 | 2 | |
| Deletion | Chr1 | 4870703 | 4870704 | 1 | |
| Deletion | Chr2 | 6852921 | 6852923 | 2 | |
| Deletion | Chr9 | 7716628 | 7716629 | 1 | |
| Deletion | Chr2 | 8921080 | 8921087 | 7 | |
| Deletion | Chr1 | 12123335 | 12123339 | 4 | |
| Deletion | Chr2 | 13395198 | 13395199 | 1 | |
| Deletion | Chr9 | 16984001 | 17105000 | 120999 | 18 |
| Deletion | Chr10 | 19405520 | 19405529 | 9 | |
| Deletion | Chr11 | 22286584 | 22286585 | 1 | |
| Deletion | Chr3 | 22874224 | 22874225 | 1 | |
| Deletion | Chr3 | 24368823 | 24368827 | 4 | |
| Deletion | Chr8 | 24686053 | 24686054 | 1 | |
| Deletion | Chr7 | 25122881 | 25122884 | 3 | |
| Deletion | Chr1 | 26260677 | 26260681 | 4 | |
| Deletion | Chr4 | 30147441 | 30147443 | 2 | OsKitaake04g231600 |
| Deletion | Chr6 | 30921378 | 30921393 | 15 | |
| Deletion | Chr1 | 31384823 | 31384825 | 2 | |
| Deletion | Chr1 | 35432337 | 35432339 | 2 | |
| Deletion | Chr2 | 35926022 | 35926031 | 9 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 40877936 | 40877940 | 3 | |
| Insertion | Chr4 | 17071799 | 17071802 | 2 | |
| Insertion | Chr6 | 609213 | 609216 | 2 | |
| Insertion | Chr11 | 25155659 | 25155662 | 2 |