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Mutant Information

Mutant Name	FN3233-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3233-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19709738 G-A Hetero INTERGENIC
SBS Chr1 33570735 C-T Hetero INTERGENIC
SBS Chr1 39255740 A-C Hetero INTERGENIC
SBS Chr1 43588752 C-A Hetero INTERGENIC
SBS Chr2 13559734 G-T Hetero INTERGENIC
SBS Chr2 14908913 C-T Hetero INTERGENIC
SBS Chr2 16340781 C-T Hetero INTERGENIC
SBS Chr2 21763076 G-A Hetero INTERGENIC
SBS Chr3 15158774 G-C Hetero INTERGENIC
SBS Chr3 19133409 A-G Hetero INTERGENIC
SBS Chr3 37517207 A-T Hetero INTRON
SBS Chr4 1249081 C-T Homo INTRON
SBS Chr4 1696675 C-A Homo INTERGENIC
SBS Chr4 8484701 G-T Hetero INTERGENIC
SBS Chr4 21361898 G-A Hetero INTERGENIC
SBS Chr4 32797531 C-T Hetero UTR_5_PRIME
SBS Chr5 6686615 A-G Hetero INTERGENIC
SBS Chr5 9153038 G-A Homo INTRON
SBS Chr5 9200655 C-T Homo INTERGENIC
SBS Chr5 11402377 C-T Homo INTERGENIC
SBS Chr6 20818709 G-A Homo INTERGENIC
SBS Chr6 22786064 T-A Homo INTERGENIC
SBS Chr7 6082789 G-T Hetero INTERGENIC
SBS Chr7 12635572 A-G Hetero INTERGENIC
SBS Chr7 26718303 G-A Homo INTERGENIC
SBS Chr8 18587527 T-C Homo INTERGENIC
SBS Chr8 24294833 G-A Hetero INTERGENIC
SBS Chr9 7350505 G-T Hetero INTERGENIC
SBS Chr9 17969689 G-A Homo INTERGENIC
SBS Chr9 18090001 G-T Homo INTERGENIC
SBS Chr9 22371205 C-T Homo INTERGENIC
SBS Chr10 4378116 C-T Hetero INTERGENIC
SBS Chr10 21007137 T-G Hetero INTERGENIC
SBS Chr10 23775453 G-A Hetero INTERGENIC
SBS Chr11 16544213 C-T Hetero INTERGENIC
SBS Chr11 16871395 T-C Hetero INTERGENIC
SBS Chr11 17532526 G-A Homo INTERGENIC
SBS Chr12 3224184 T-G Homo INTERGENIC
SBS Chr12 15668151 G-A Hetero INTERGENIC
SBS Chr12 17150012 T-C Hetero INTERGENIC
SBS Chr12 18498580 G-A Hetero INTERGENIC
SBS Chr12 22463757 G-A Hetero INTERGENIC
SBS Chr12 27012091 T-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 577690 577696 6
Deletion Chr2 800815 800816 1
Deletion Chr5 2232563 2232571 8
Deletion Chr5 2861198 2861200 2
Deletion Chr8 4623340 4623341 1
Deletion Chr3 10801109 10801111 2
Deletion Chr1 14988001 15150000 161999 14
Deletion Chr1 15157001 15252000 94999 12
Deletion Chr10 17849852 17849853 1
Deletion Chr11 18110035 18110045 10
Deletion Chr10 18683188 18683190 2
Deletion Chr8 19426744 19426746 2
Deletion Chr7 20549589 20549591 2
Deletion Chr2 20586503 20586504 1
Deletion Chr6 20736081 20736085 4
Deletion Chr6 23384039 23384041 2
Deletion Chr11 25175620 25175622 2
Deletion Chr11 25672298 25672299 1
Deletion Chr8 27977375 27977384 9
Deletion Chr2 28452327 28452328 1
Deletion Chr4 32355320 32355340 20

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25535087 25535091 3
Insertion Chr1 39818697 39818699 1
Insertion Chr2 11020415 11020418 2
Insertion Chr2 20615391 20615393 1
Insertion Chr2 29444115 29444117 1
Insertion Chr4 32560937 32560940 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 20058208 20061637
Inversion Chr8 20058216 20061646

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 282560 Chr10 11845587 OsKitaake12g003101
Translocation Chr9 7590720 Chr3 24481280 OsKitaake03g261600
Translocation Chr3 19115743 Chr1 32042960
Translocation Chr3 19115748 Chr1 32022553

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19709738	G-A	Hetero	INTERGENIC
SBS	Chr1	33570735	C-T	Hetero	INTERGENIC
SBS	Chr1	39255740	A-C	Hetero	INTERGENIC
SBS	Chr1	43588752	C-A	Hetero	INTERGENIC
SBS	Chr2	13559734	G-T	Hetero	INTERGENIC
SBS	Chr2	14908913	C-T	Hetero	INTERGENIC
SBS	Chr2	16340781	C-T	Hetero	INTERGENIC
SBS	Chr2	21763076	G-A	Hetero	INTERGENIC
SBS	Chr3	15158774	G-C	Hetero	INTERGENIC
SBS	Chr3	19133409	A-G	Hetero	INTERGENIC
SBS	Chr3	37517207	A-T	Hetero	INTRON
SBS	Chr4	1249081	C-T	Homo	INTRON
SBS	Chr4	1696675	C-A	Homo	INTERGENIC
SBS	Chr4	8484701	G-T	Hetero	INTERGENIC
SBS	Chr4	21361898	G-A	Hetero	INTERGENIC
SBS	Chr4	32797531	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	6686615	A-G	Hetero	INTERGENIC
SBS	Chr5	9153038	G-A	Homo	INTRON
SBS	Chr5	9200655	C-T	Homo	INTERGENIC
SBS	Chr5	11402377	C-T	Homo	INTERGENIC
SBS	Chr6	20818709	G-A	Homo	INTERGENIC
SBS	Chr6	22786064	T-A	Homo	INTERGENIC
SBS	Chr7	6082789	G-T	Hetero	INTERGENIC
SBS	Chr7	12635572	A-G	Hetero	INTERGENIC
SBS	Chr7	26718303	G-A	Homo	INTERGENIC
SBS	Chr8	18587527	T-C	Homo	INTERGENIC
SBS	Chr8	24294833	G-A	Hetero	INTERGENIC
SBS	Chr9	7350505	G-T	Hetero	INTERGENIC
SBS	Chr9	17969689	G-A	Homo	INTERGENIC
SBS	Chr9	18090001	G-T	Homo	INTERGENIC
SBS	Chr9	22371205	C-T	Homo	INTERGENIC
SBS	Chr10	4378116	C-T	Hetero	INTERGENIC
SBS	Chr10	21007137	T-G	Hetero	INTERGENIC
SBS	Chr10	23775453	G-A	Hetero	INTERGENIC
SBS	Chr11	16544213	C-T	Hetero	INTERGENIC
SBS	Chr11	16871395	T-C	Hetero	INTERGENIC
SBS	Chr11	17532526	G-A	Homo	INTERGENIC
SBS	Chr12	3224184	T-G	Homo	INTERGENIC
SBS	Chr12	15668151	G-A	Hetero	INTERGENIC
SBS	Chr12	17150012	T-C	Hetero	INTERGENIC
SBS	Chr12	18498580	G-A	Hetero	INTERGENIC
SBS	Chr12	22463757	G-A	Hetero	INTERGENIC
SBS	Chr12	27012091	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	577690	577696	6
Deletion	Chr2	800815	800816	1
Deletion	Chr5	2232563	2232571	8
Deletion	Chr5	2861198	2861200	2
Deletion	Chr8	4623340	4623341	1
Deletion	Chr3	10801109	10801111	2
Deletion	Chr1	14988001	15150000	161999	14
Deletion	Chr1	15157001	15252000	94999	12
Deletion	Chr10	17849852	17849853	1
Deletion	Chr11	18110035	18110045	10
Deletion	Chr10	18683188	18683190	2
Deletion	Chr8	19426744	19426746	2
Deletion	Chr7	20549589	20549591	2
Deletion	Chr2	20586503	20586504	1
Deletion	Chr6	20736081	20736085	4
Deletion	Chr6	23384039	23384041	2
Deletion	Chr11	25175620	25175622	2
Deletion	Chr11	25672298	25672299	1
Deletion	Chr8	27977375	27977384	9
Deletion	Chr2	28452327	28452328	1
Deletion	Chr4	32355320	32355340	20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	20058208	20061637
Inversion	Chr8	20058216	20061646

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes