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Mutant Information

Mutant Name	FN3234-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3234-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	560812	T-A	Hetero	INTERGENIC
SBS	Chr1	17889413	G-A	Homo	INTERGENIC
SBS	Chr1	21878708	G-A	Homo	INTERGENIC
SBS	Chr1	25589985	C-A	Homo	INTERGENIC
SBS	Chr2	74098	T-C	Hetero	INTERGENIC
SBS	Chr2	13012419	G-T	Hetero	INTERGENIC
SBS	Chr2	13012420	A-T	Hetero	INTERGENIC
SBS	Chr2	13432793	C-T	Hetero	INTERGENIC
SBS	Chr3	9106363	G-T	Hetero	INTERGENIC
SBS	Chr3	18942452	A-T	Hetero	INTERGENIC
SBS	Chr3	22219954	C-T	Hetero	INTERGENIC
SBS	Chr3	24851558	T-C	Hetero	INTERGENIC
SBS	Chr3	29407493	C-G	Hetero	UTR_5_PRIME
SBS	Chr4	6522387	G-T	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	24227690	C-G	Hetero	INTRON
SBS	Chr4	28401561	A-C	Homo	INTRON
SBS	Chr4	28401562	T-A	Homo	INTRON
SBS	Chr4	35200828	G-C	Hetero	INTRON
SBS	Chr5	4730821	C-A	Homo	INTERGENIC
SBS	Chr5	5775129	C-G	Hetero	INTERGENIC
SBS	Chr5	8175747	T-A	Hetero	INTERGENIC
SBS	Chr6	131279	G-A	Hetero	INTERGENIC
SBS	Chr6	5598700	A-G	Homo	UTR_3_PRIME
SBS	Chr6	11069624	C-T	Homo	INTERGENIC
SBS	Chr6	25185251	A-G	Homo	INTERGENIC
SBS	Chr7	23423630	A-T	Hetero	INTERGENIC
SBS	Chr7	28797398	G-A	Homo	INTRON
SBS	Chr7	29044193	C-T	Homo	INTERGENIC
SBS	Chr8	2309897	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	6262152	G-A	Hetero	INTERGENIC
SBS	Chr9	11842459	T-C	Hetero	INTERGENIC
SBS	Chr9	17364567	G-A	Homo	INTERGENIC
SBS	Chr9	17364569	A-T	Homo	INTERGENIC
SBS	Chr11	16079788	G-A	Homo	INTERGENIC
SBS	Chr11	16494367	A-G	Homo	INTERGENIC
SBS	Chr11	26725714	C-A	Homo	INTERGENIC
SBS	Chr11	26850474	T-C	Homo	INTERGENIC
SBS	Chr12	10107326	C-G	Hetero	INTERGENIC
SBS	Chr12	11264378	G-A	Homo	INTERGENIC
SBS	Chr12	25369718	G-C	Hetero	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4130063	4130064	1
Deletion	Chr7	5202459	5202460	1
Deletion	Chr12	7429906	7429991	85
Deletion	Chr1	11848762	11848855	93
Deletion	Chr8	15901627	15901629	2
Deletion	Chr4	19437001	19448000	10999	OsKitaake04g099601
Deletion	Chr9	21875382	21875389	7
Deletion	Chr11	28248304	28248312	8
Deletion	Chr1	30435086	30435087	1
Deletion	Chr2	33254761	33254762	1	OsKitaake02g342200
Deletion	Chr1	38637198	38637200	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	6779438	6779441	2
Insertion	Chr3	37368951	37368954	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17181440	17468297	OsKitaake09g131200

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17169316	Chr6	20783902
Translocation	Chr9	17181424	Chr6	20784424