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Mutant Information

Mutant Name	FN3235-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3235-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3481715 C-T Hetero INTERGENIC
SBS Chr1 30991241 T-C Homo SYNONYMOUS_CODING
SBS Chr1 31653043 C-A Homo INTERGENIC
SBS Chr1 34253637 T-A Homo INTERGENIC
SBS Chr2 11181993 G-A Homo INTERGENIC
SBS Chr2 17783899 C-A Hetero INTERGENIC
SBS Chr2 25695901 A-C Hetero INTERGENIC
SBS Chr3 15705326 A-G Hetero INTRON
SBS Chr3 24593588 T-C Hetero INTERGENIC
SBS Chr3 34586903 T-C Hetero INTERGENIC
SBS Chr3 37309972 G-A Hetero INTERGENIC
SBS Chr4 10175193 C-A Hetero INTERGENIC
SBS Chr4 32580331 G-A Hetero INTRON
SBS Chr4 33365995 T-A Hetero INTERGENIC
SBS Chr5 5443101 T-G Hetero INTERGENIC
SBS Chr5 7610354 G-A Hetero INTRON
SBS Chr5 10071625 T-G Hetero INTERGENIC
SBS Chr5 24366900 G-A Homo INTERGENIC
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr6 2996743 A-G Hetero INTRON
SBS Chr6 5519345 G-A Hetero INTERGENIC
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 23235128 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 26147671 G-T Hetero INTERGENIC
SBS Chr8 3378139 A-G Hetero INTERGENIC
SBS Chr8 4522917 C-T Hetero INTERGENIC
SBS Chr8 6556753 G-A Hetero INTERGENIC
SBS Chr8 6927821 C-A Hetero INTERGENIC
SBS Chr8 21222905 T-C Homo INTERGENIC
SBS Chr9 322145 A-G Hetero INTERGENIC
SBS Chr9 15442398 A-G Hetero INTERGENIC
SBS Chr10 1233387 G-T Hetero UTR_5_PRIME
SBS Chr10 5350457 C-T Hetero INTERGENIC
SBS Chr10 5943675 C-T Homo INTERGENIC
SBS Chr10 16364751 C-A Homo INTERGENIC
SBS Chr10 22811645 A-G Hetero INTERGENIC
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 15732303 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g126400
SBS Chr11 16220345 G-A Hetero INTERGENIC
SBS Chr11 18982039 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g147800
SBS Chr11 21741661 C-T Hetero INTERGENIC
SBS Chr11 25458639 C-A Homo INTERGENIC
SBS Chr12 2374207 C-T Hetero INTERGENIC
SBS Chr12 7010716 T-G Hetero INTERGENIC
SBS Chr12 10737538 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3339001 3372000 32999 4
Deletion Chr7 5123150 5123151 1 OsKitaake07g062300
Deletion Chr12 8655666 8655668 2
Deletion Chr3 17360302 17360329 27
Deletion Chr12 19427158 19427160 2
Deletion Chr5 20577001 20616000 38999 4
Deletion Chr7 24539001 24564000 24999 OsKitaake07g218700
Deletion Chr2 26370699 26370706 7 OsKitaake02g262800

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 27680367 27680373 5
Insertion Chr8 16521293 16521296 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10675620 10685567
Inversion Chr4 10675622 10685565
Inversion Chr9 14832667 15714767
Inversion Chr5 20579621 20807337
Inversion Chr5 20615827 20807346

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12390400 Chr1 35577582
Translocation Chr7 12390404 Chr1 35577576

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3481715	C-T	Hetero	INTERGENIC
SBS	Chr1	30991241	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr1	31653043	C-A	Homo	INTERGENIC
SBS	Chr1	34253637	T-A	Homo	INTERGENIC
SBS	Chr2	11181993	G-A	Homo	INTERGENIC
SBS	Chr2	17783899	C-A	Hetero	INTERGENIC
SBS	Chr2	25695901	A-C	Hetero	INTERGENIC
SBS	Chr3	15705326	A-G	Hetero	INTRON
SBS	Chr3	24593588	T-C	Hetero	INTERGENIC
SBS	Chr3	34586903	T-C	Hetero	INTERGENIC
SBS	Chr3	37309972	G-A	Hetero	INTERGENIC
SBS	Chr4	10175193	C-A	Hetero	INTERGENIC
SBS	Chr4	32580331	G-A	Hetero	INTRON
SBS	Chr4	33365995	T-A	Hetero	INTERGENIC
SBS	Chr5	5443101	T-G	Hetero	INTERGENIC
SBS	Chr5	7610354	G-A	Hetero	INTRON
SBS	Chr5	10071625	T-G	Hetero	INTERGENIC
SBS	Chr5	24366900	G-A	Homo	INTERGENIC
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr6	2996743	A-G	Hetero	INTRON
SBS	Chr6	5519345	G-A	Hetero	INTERGENIC
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	23235128	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	26147671	G-T	Hetero	INTERGENIC
SBS	Chr8	3378139	A-G	Hetero	INTERGENIC
SBS	Chr8	4522917	C-T	Hetero	INTERGENIC
SBS	Chr8	6556753	G-A	Hetero	INTERGENIC
SBS	Chr8	6927821	C-A	Hetero	INTERGENIC
SBS	Chr8	21222905	T-C	Homo	INTERGENIC
SBS	Chr9	322145	A-G	Hetero	INTERGENIC
SBS	Chr9	15442398	A-G	Hetero	INTERGENIC
SBS	Chr10	1233387	G-T	Hetero	UTR_5_PRIME
SBS	Chr10	5350457	C-T	Hetero	INTERGENIC
SBS	Chr10	5943675	C-T	Homo	INTERGENIC
SBS	Chr10	16364751	C-A	Homo	INTERGENIC
SBS	Chr10	22811645	A-G	Hetero	INTERGENIC
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	15732303	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g126400
SBS	Chr11	16220345	G-A	Hetero	INTERGENIC
SBS	Chr11	18982039	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g147800
SBS	Chr11	21741661	C-T	Hetero	INTERGENIC
SBS	Chr11	25458639	C-A	Homo	INTERGENIC
SBS	Chr12	2374207	C-T	Hetero	INTERGENIC
SBS	Chr12	7010716	T-G	Hetero	INTERGENIC
SBS	Chr12	10737538	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3339001	3372000	32999	4
Deletion	Chr7	5123150	5123151	1	OsKitaake07g062300
Deletion	Chr12	8655666	8655668	2
Deletion	Chr3	17360302	17360329	27
Deletion	Chr12	19427158	19427160	2
Deletion	Chr5	20577001	20616000	38999	4
Deletion	Chr7	24539001	24564000	24999	OsKitaake07g218700
Deletion	Chr2	26370699	26370706	7	OsKitaake02g262800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10675620	10685567
Inversion	Chr4	10675622	10685565
Inversion	Chr9	14832667	15714767
Inversion	Chr5	20579621	20807337
Inversion	Chr5	20615827	20807346

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes