Search Kitaake

Mutant Information

Mutant Name	FN3236-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3236-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22584171 C-G Hetero INTERGENIC
SBS Chr1 29604025 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g290300
SBS Chr1 37192667 G-C Hetero INTERGENIC
SBS Chr1 41620026 A-G Homo INTERGENIC
SBS Chr2 13366554 C-A Hetero INTRON
SBS Chr2 14542550 G-T Hetero INTERGENIC
SBS Chr2 29793078 G-C Hetero INTERGENIC
SBS Chr2 36748637 G-A Hetero INTERGENIC
SBS Chr3 1700642 G-A Hetero INTRON
SBS Chr3 11562730 T-C Hetero INTERGENIC
SBS Chr3 11579065 T-A Hetero INTERGENIC
SBS Chr3 13890573 A-G Hetero INTERGENIC
SBS Chr3 18115859 A-G Hetero INTERGENIC
SBS Chr3 26868175 G-C Hetero INTERGENIC
SBS Chr4 1515106 C-A Homo INTERGENIC
SBS Chr4 3873844 G-A Hetero INTERGENIC
SBS Chr4 5259037 G-A Homo INTERGENIC
SBS Chr4 16414033 G-A Hetero INTERGENIC
SBS Chr4 18997032 A-T Hetero INTERGENIC
SBS Chr4 32627224 A-G Hetero INTERGENIC
SBS Chr4 35564206 T-C Hetero INTRON
SBS Chr5 550450 G-T Hetero INTERGENIC
SBS Chr5 1141992 C-T Hetero INTERGENIC
SBS Chr5 11133155 C-T Hetero INTERGENIC
SBS Chr5 13967379 A-T Hetero INTRON
SBS Chr5 17002400 A-G Hetero INTRON
SBS Chr6 1142516 G-A Hetero INTERGENIC
SBS Chr6 6489185 A-G Hetero INTERGENIC
SBS Chr6 17778597 G-A Hetero INTERGENIC
SBS Chr7 249529 G-A Hetero INTERGENIC
SBS Chr7 8715812 G-T Hetero INTERGENIC
SBS Chr7 16157763 A-C Hetero INTERGENIC
SBS Chr7 16913181 C-T Hetero INTERGENIC
SBS Chr7 18216052 A-T Hetero INTRON
SBS Chr7 23601646 G-A Hetero INTRON
SBS Chr7 25225541 A-G Hetero INTERGENIC
SBS Chr8 6776100 T-C Hetero INTERGENIC
SBS Chr8 6954055 T-C Hetero INTERGENIC
SBS Chr8 21022736 A-T Homo INTERGENIC
SBS Chr8 21022737 C-T Homo INTERGENIC
SBS Chr8 21562436 C-G Homo NON_SYNONYMOUS_CODING OsKitaake08g162700
SBS Chr9 103032 G-A Hetero INTERGENIC
SBS Chr9 4138976 G-T Homo INTERGENIC
SBS Chr9 5458825 G-A Homo SYNONYMOUS_CODING
SBS Chr9 11937672 G-T Hetero INTERGENIC
SBS Chr9 15347866 C-A Hetero INTERGENIC
SBS Chr10 358888 C-G Hetero INTRON
SBS Chr10 7819072 G-C Homo INTERGENIC
SBS Chr10 20620601 C-T Hetero INTERGENIC
SBS Chr11 9163709 C-G Hetero INTERGENIC
SBS Chr11 13780406 A-C Hetero INTERGENIC
SBS Chr11 17370746 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g135900
SBS Chr12 3431554 G-A Hetero INTRON
SBS Chr12 4087971 A-G Hetero INTERGENIC
SBS Chr12 4175094 C-T Hetero INTRON
SBS Chr12 8744339 C-T Hetero INTERGENIC
SBS Chr12 14065952 C-A Hetero INTERGENIC
SBS Chr12 24275514 A-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1459801 1459818 17
Deletion Chr9 2256342 2256354 12
Deletion Chr8 3239498 3239503 5
Deletion Chr2 4216638 4216652 14
Deletion Chr8 4283933 4283937 4 OsKitaake08g048400
Deletion Chr7 5387336 5387345 9 OsKitaake07g065500
Deletion Chr8 5558528 5558530 2
Deletion Chr8 6707117 6707118 1
Deletion Chr5 7116813 7116815 2
Deletion Chr5 7611355 7611360 5
Deletion Chr9 7734543 7734547 4
Deletion Chr3 8578816 8578841 25
Deletion Chr6 8974007 8974009 2
Deletion Chr4 10587063 10587073 10
Deletion Chr8 15962518 15962521 3
Deletion Chr12 18274655 18274656 1
Deletion Chr2 18772378 18772380 2
Deletion Chr8 21203717 21203724 7
Deletion Chr1 23541229 23541238 9
Deletion Chr3 24263363 24263364 1
Deletion Chr1 24313086 24313105 19
Deletion Chr8 26559875 26559884 9
Deletion Chr5 27146124 27146131 7
Deletion Chr1 36000047 36000048 1
Deletion Chr1 37760437 37760447 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8937214 8937218 3
Insertion Chr3 10077559 10077562 2
Insertion Chr7 4347550 4347552 1
Insertion Chr12 4134341 4134344 2
Insertion Chr12 13183351 13183355 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 14794540 14800934 OsKitaake03g192900
Inversion Chr3 14794559 14800935 OsKitaake03g192900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22584171	C-G	Hetero	INTERGENIC
SBS	Chr1	29604025	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g290300
SBS	Chr1	37192667	G-C	Hetero	INTERGENIC
SBS	Chr1	41620026	A-G	Homo	INTERGENIC
SBS	Chr2	13366554	C-A	Hetero	INTRON
SBS	Chr2	14542550	G-T	Hetero	INTERGENIC
SBS	Chr2	29793078	G-C	Hetero	INTERGENIC
SBS	Chr2	36748637	G-A	Hetero	INTERGENIC
SBS	Chr3	1700642	G-A	Hetero	INTRON
SBS	Chr3	11562730	T-C	Hetero	INTERGENIC
SBS	Chr3	11579065	T-A	Hetero	INTERGENIC
SBS	Chr3	13890573	A-G	Hetero	INTERGENIC
SBS	Chr3	18115859	A-G	Hetero	INTERGENIC
SBS	Chr3	26868175	G-C	Hetero	INTERGENIC
SBS	Chr4	1515106	C-A	Homo	INTERGENIC
SBS	Chr4	3873844	G-A	Hetero	INTERGENIC
SBS	Chr4	5259037	G-A	Homo	INTERGENIC
SBS	Chr4	16414033	G-A	Hetero	INTERGENIC
SBS	Chr4	18997032	A-T	Hetero	INTERGENIC
SBS	Chr4	32627224	A-G	Hetero	INTERGENIC
SBS	Chr4	35564206	T-C	Hetero	INTRON
SBS	Chr5	550450	G-T	Hetero	INTERGENIC
SBS	Chr5	1141992	C-T	Hetero	INTERGENIC
SBS	Chr5	11133155	C-T	Hetero	INTERGENIC
SBS	Chr5	13967379	A-T	Hetero	INTRON
SBS	Chr5	17002400	A-G	Hetero	INTRON
SBS	Chr6	1142516	G-A	Hetero	INTERGENIC
SBS	Chr6	6489185	A-G	Hetero	INTERGENIC
SBS	Chr6	17778597	G-A	Hetero	INTERGENIC
SBS	Chr7	249529	G-A	Hetero	INTERGENIC
SBS	Chr7	8715812	G-T	Hetero	INTERGENIC
SBS	Chr7	16157763	A-C	Hetero	INTERGENIC
SBS	Chr7	16913181	C-T	Hetero	INTERGENIC
SBS	Chr7	18216052	A-T	Hetero	INTRON
SBS	Chr7	23601646	G-A	Hetero	INTRON
SBS	Chr7	25225541	A-G	Hetero	INTERGENIC
SBS	Chr8	6776100	T-C	Hetero	INTERGENIC
SBS	Chr8	6954055	T-C	Hetero	INTERGENIC
SBS	Chr8	21022736	A-T	Homo	INTERGENIC
SBS	Chr8	21022737	C-T	Homo	INTERGENIC
SBS	Chr8	21562436	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g162700
SBS	Chr9	103032	G-A	Hetero	INTERGENIC
SBS	Chr9	4138976	G-T	Homo	INTERGENIC
SBS	Chr9	5458825	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	11937672	G-T	Hetero	INTERGENIC
SBS	Chr9	15347866	C-A	Hetero	INTERGENIC
SBS	Chr10	358888	C-G	Hetero	INTRON
SBS	Chr10	7819072	G-C	Homo	INTERGENIC
SBS	Chr10	20620601	C-T	Hetero	INTERGENIC
SBS	Chr11	9163709	C-G	Hetero	INTERGENIC
SBS	Chr11	13780406	A-C	Hetero	INTERGENIC
SBS	Chr11	17370746	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g135900
SBS	Chr12	3431554	G-A	Hetero	INTRON
SBS	Chr12	4087971	A-G	Hetero	INTERGENIC
SBS	Chr12	4175094	C-T	Hetero	INTRON
SBS	Chr12	8744339	C-T	Hetero	INTERGENIC
SBS	Chr12	14065952	C-A	Hetero	INTERGENIC
SBS	Chr12	24275514	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1459801	1459818	17
Deletion	Chr9	2256342	2256354	12
Deletion	Chr8	3239498	3239503	5
Deletion	Chr2	4216638	4216652	14
Deletion	Chr8	4283933	4283937	4	OsKitaake08g048400
Deletion	Chr7	5387336	5387345	9	OsKitaake07g065500
Deletion	Chr8	5558528	5558530	2
Deletion	Chr8	6707117	6707118	1
Deletion	Chr5	7116813	7116815	2
Deletion	Chr5	7611355	7611360	5
Deletion	Chr9	7734543	7734547	4
Deletion	Chr3	8578816	8578841	25
Deletion	Chr6	8974007	8974009	2
Deletion	Chr4	10587063	10587073	10
Deletion	Chr8	15962518	15962521	3
Deletion	Chr12	18274655	18274656	1
Deletion	Chr2	18772378	18772380	2
Deletion	Chr8	21203717	21203724	7
Deletion	Chr1	23541229	23541238	9
Deletion	Chr3	24263363	24263364	1
Deletion	Chr1	24313086	24313105	19
Deletion	Chr8	26559875	26559884	9
Deletion	Chr5	27146124	27146131	7
Deletion	Chr1	36000047	36000048	1
Deletion	Chr1	37760437	37760447	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14794540	14800934	OsKitaake03g192900
Inversion	Chr3	14794559	14800935	OsKitaake03g192900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes