Search Kitaake

Mutant Information

Mutant Name	FN3239-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3239-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8982306 C-T Hetero INTERGENIC
SBS Chr1 9432235 G-A Hetero INTERGENIC
SBS Chr1 10970667 C-T Hetero INTERGENIC
SBS Chr1 12132312 C-T Hetero INTERGENIC
SBS Chr1 16883210 G-A Hetero INTERGENIC
SBS Chr1 22236980 C-T Hetero INTERGENIC
SBS Chr1 24567323 G-A Hetero INTERGENIC
SBS Chr2 4704680 A-C Hetero UTR_3_PRIME
SBS Chr2 6747245 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 11200641 C-G Hetero INTERGENIC
SBS Chr2 25047315 G-A Homo INTERGENIC
SBS Chr2 26254866 C-T Homo INTERGENIC
SBS Chr2 31421663 C-T Hetero INTERGENIC
SBS Chr2 31490798 C-T Hetero INTERGENIC
SBS Chr4 6912661 G-A Homo INTERGENIC
SBS Chr4 15201076 C-G Hetero INTERGENIC
SBS Chr5 4637002 C-T Hetero INTERGENIC
SBS Chr5 10380685 C-T Hetero INTERGENIC
SBS Chr5 11839048 G-T Homo INTERGENIC
SBS Chr5 21947097 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g179100
SBS Chr5 21949288 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g179100
SBS Chr5 24276459 T-C Homo INTERGENIC
SBS Chr6 5530029 C-T Hetero INTERGENIC
SBS Chr6 9579406 A-G Hetero INTERGENIC
SBS Chr6 18469703 C-T Hetero INTERGENIC
SBS Chr6 22532178 G-C Hetero INTERGENIC
SBS Chr6 28581538 C-T Hetero INTERGENIC
SBS Chr7 12621094 G-A Hetero INTERGENIC
SBS Chr7 21376615 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 22551088 A-G Hetero INTRON
SBS Chr7 28328482 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g268200
SBS Chr7 29358235 T-A Hetero INTERGENIC
SBS Chr8 14979091 T-C Hetero INTERGENIC
SBS Chr8 25146934 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g195800
SBS Chr9 3585571 C-G Hetero INTERGENIC
SBS Chr9 8258199 G-A Hetero INTERGENIC
SBS Chr9 11716355 A-T Hetero INTERGENIC
SBS Chr9 13489281 T-C Hetero INTRON
SBS Chr10 3048061 T-A Hetero INTERGENIC
SBS Chr10 3120361 G-T Homo INTERGENIC
SBS Chr10 19261989 G-A Homo INTERGENIC
SBS Chr10 22636709 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g187300
SBS Chr11 1240768 C-T Hetero INTERGENIC
SBS Chr11 8826037 G-A Hetero INTERGENIC
SBS Chr11 9718124 C-A Hetero INTERGENIC
SBS Chr11 11599864 C-T Hetero INTERGENIC
SBS Chr11 19092211 G-A Hetero INTERGENIC
SBS Chr11 20138304 C-T Hetero INTERGENIC
SBS Chr12 11311799 C-T Hetero INTERGENIC
SBS Chr12 15145495 T-A Hetero INTERGENIC
SBS Chr12 16758263 A-G Hetero INTERGENIC
SBS Chr12 26797104 G-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1916051 1916057 6
Deletion Chr9 2567880 2567881 1
Deletion Chr2 8388450 8388452 2
Deletion Chr7 9043001 9545000 501999 26
Deletion Chr11 10171399 10171400 1
Deletion Chr6 16356637 16356639 2
Deletion Chr3 17438531 17438532 1
Deletion Chr2 20195544 20195546 2 OsKitaake02g197132
Deletion Chr1 22725741 22725742 1
Deletion Chr11 22873001 22901000 27999 3
Deletion Chr11 23961874 23961880 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17284106 17284109 2
Insertion Chr8 6227208 6227213 4
Insertion Chr10 9684113 9684118 4
Insertion Chr11 11702156 11702159 2
Insertion Chr12 660661 660664 2
Insertion Chr8 29297879 29297882 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2842348 Chr2 15565950
Translocation Chr7 14058782 Chr3 5339123 OsKitaake03g075400
Translocation Chr7 14058945 Chr3 5339126 OsKitaake03g075400
Translocation Chr11 19919843 Chr2 3418315 OsKitaake02g049600
Translocation Chr4 30430021 Chr2 31874337 OsKitaake04g234600
Translocation Chr4 30430101 Chr2 31874362 OsKitaake04g234600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8982306	C-T	Hetero	INTERGENIC
SBS	Chr1	9432235	G-A	Hetero	INTERGENIC
SBS	Chr1	10970667	C-T	Hetero	INTERGENIC
SBS	Chr1	12132312	C-T	Hetero	INTERGENIC
SBS	Chr1	16883210	G-A	Hetero	INTERGENIC
SBS	Chr1	22236980	C-T	Hetero	INTERGENIC
SBS	Chr1	24567323	G-A	Hetero	INTERGENIC
SBS	Chr2	4704680	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	6747245	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	11200641	C-G	Hetero	INTERGENIC
SBS	Chr2	25047315	G-A	Homo	INTERGENIC
SBS	Chr2	26254866	C-T	Homo	INTERGENIC
SBS	Chr2	31421663	C-T	Hetero	INTERGENIC
SBS	Chr2	31490798	C-T	Hetero	INTERGENIC
SBS	Chr4	6912661	G-A	Homo	INTERGENIC
SBS	Chr4	15201076	C-G	Hetero	INTERGENIC
SBS	Chr5	4637002	C-T	Hetero	INTERGENIC
SBS	Chr5	10380685	C-T	Hetero	INTERGENIC
SBS	Chr5	11839048	G-T	Homo	INTERGENIC
SBS	Chr5	21947097	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g179100
SBS	Chr5	21949288	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g179100
SBS	Chr5	24276459	T-C	Homo	INTERGENIC
SBS	Chr6	5530029	C-T	Hetero	INTERGENIC
SBS	Chr6	9579406	A-G	Hetero	INTERGENIC
SBS	Chr6	18469703	C-T	Hetero	INTERGENIC
SBS	Chr6	22532178	G-C	Hetero	INTERGENIC
SBS	Chr6	28581538	C-T	Hetero	INTERGENIC
SBS	Chr7	12621094	G-A	Hetero	INTERGENIC
SBS	Chr7	21376615	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	22551088	A-G	Hetero	INTRON
SBS	Chr7	28328482	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g268200
SBS	Chr7	29358235	T-A	Hetero	INTERGENIC
SBS	Chr8	14979091	T-C	Hetero	INTERGENIC
SBS	Chr8	25146934	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g195800
SBS	Chr9	3585571	C-G	Hetero	INTERGENIC
SBS	Chr9	8258199	G-A	Hetero	INTERGENIC
SBS	Chr9	11716355	A-T	Hetero	INTERGENIC
SBS	Chr9	13489281	T-C	Hetero	INTRON
SBS	Chr10	3048061	T-A	Hetero	INTERGENIC
SBS	Chr10	3120361	G-T	Homo	INTERGENIC
SBS	Chr10	19261989	G-A	Homo	INTERGENIC
SBS	Chr10	22636709	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g187300
SBS	Chr11	1240768	C-T	Hetero	INTERGENIC
SBS	Chr11	8826037	G-A	Hetero	INTERGENIC
SBS	Chr11	9718124	C-A	Hetero	INTERGENIC
SBS	Chr11	11599864	C-T	Hetero	INTERGENIC
SBS	Chr11	19092211	G-A	Hetero	INTERGENIC
SBS	Chr11	20138304	C-T	Hetero	INTERGENIC
SBS	Chr12	11311799	C-T	Hetero	INTERGENIC
SBS	Chr12	15145495	T-A	Hetero	INTERGENIC
SBS	Chr12	16758263	A-G	Hetero	INTERGENIC
SBS	Chr12	26797104	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1916051	1916057	6
Deletion	Chr9	2567880	2567881	1
Deletion	Chr2	8388450	8388452	2
Deletion	Chr7	9043001	9545000	501999	26
Deletion	Chr11	10171399	10171400	1
Deletion	Chr6	16356637	16356639	2
Deletion	Chr3	17438531	17438532	1
Deletion	Chr2	20195544	20195546	2	OsKitaake02g197132
Deletion	Chr1	22725741	22725742	1
Deletion	Chr11	22873001	22901000	27999	3
Deletion	Chr11	23961874	23961880	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2842348	Chr2	15565950
Translocation	Chr7	14058782	Chr3	5339123	OsKitaake03g075400
Translocation	Chr7	14058945	Chr3	5339126	OsKitaake03g075400
Translocation	Chr11	19919843	Chr2	3418315	OsKitaake02g049600
Translocation	Chr4	30430021	Chr2	31874337	OsKitaake04g234600
Translocation	Chr4	30430101	Chr2	31874362	OsKitaake04g234600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes