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Mutant Information

Mutant Name	FN3241-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3241-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1557461 G-C Hetero INTERGENIC
SBS Chr1 10142997 T-C Hetero INTERGENIC
SBS Chr1 17564568 G-C Homo INTERGENIC
SBS Chr1 26760474 G-A Hetero INTERGENIC
SBS Chr1 29581451 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g289900
SBS Chr1 29581452 A-T Hetero SYNONYMOUS_CODING
SBS Chr3 1649925 T-C Hetero INTERGENIC
SBS Chr3 9509897 T-C Hetero INTERGENIC
SBS Chr3 17191228 A-G Hetero INTERGENIC
SBS Chr4 9859119 C-T Hetero INTERGENIC
SBS Chr4 33014943 T-A Homo INTRON
SBS Chr4 35673477 G-C Homo NON_SYNONYMOUS_CODING OsKitaake04g304700
SBS Chr5 11747537 C-A Hetero INTERGENIC
SBS Chr5 17714881 G-A Hetero INTERGENIC
SBS Chr5 22472401 C-T Homo INTERGENIC
SBS Chr5 24467839 G-A Homo INTRON
SBS Chr5 24467840 G-A Homo INTRON
SBS Chr6 9897073 G-A Hetero INTERGENIC
SBS Chr6 9897074 T-A Hetero INTERGENIC
SBS Chr6 15706597 C-T Hetero INTERGENIC
SBS Chr6 16172540 A-T Hetero SYNONYMOUS_CODING
SBS Chr7 12230125 C-T Hetero INTERGENIC
SBS Chr9 4652400 T-C Homo INTERGENIC
SBS Chr9 16015351 C-T Hetero INTERGENIC
SBS Chr9 20821828 T-C Hetero INTERGENIC
SBS Chr10 13493620 G-A Hetero INTRON
SBS Chr11 7586717 G-T Homo INTERGENIC
SBS Chr11 7586718 A-T Homo INTERGENIC
SBS Chr12 655476 G-A Hetero INTERGENIC
SBS Chr12 24102410 G-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4776647 4776649 2
Deletion Chr8 6744510 6744518 8
Deletion Chr8 7152499 7152529 30
Deletion Chr5 10235931 10235934 3
Deletion Chr12 11643581 11643587 6
Deletion Chr7 12340679 12340680 1
Deletion Chr5 16626230 16626250 20
Deletion Chr6 17403415 17403426 11
Deletion Chr2 19173843 19173846 3
Deletion Chr4 20183764 20183765 1
Deletion Chr12 20541652 20541660 8
Deletion Chr12 23244434 23244445 11
Deletion Chr12 25604661 25604666 5
Deletion Chr2 33109541 33109543 2
Deletion Chr3 33113959 33113966 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22567705 22567708 2
Insertion Chr2 22698133 22698136 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 26723720 27581608 OsKitaake02g277300
Inversion Chr2 26723725 27581626 OsKitaake02g277300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3110242 Chr5 17767793 2
Translocation Chr8 3319427 Chr3 36149252 2
Translocation Chr5 17707437 Chr3 36149248 OsKitaake03g399800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1557461	G-C	Hetero	INTERGENIC
SBS	Chr1	10142997	T-C	Hetero	INTERGENIC
SBS	Chr1	17564568	G-C	Homo	INTERGENIC
SBS	Chr1	26760474	G-A	Hetero	INTERGENIC
SBS	Chr1	29581451	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g289900
SBS	Chr1	29581452	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1649925	T-C	Hetero	INTERGENIC
SBS	Chr3	9509897	T-C	Hetero	INTERGENIC
SBS	Chr3	17191228	A-G	Hetero	INTERGENIC
SBS	Chr4	9859119	C-T	Hetero	INTERGENIC
SBS	Chr4	33014943	T-A	Homo	INTRON
SBS	Chr4	35673477	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g304700
SBS	Chr5	11747537	C-A	Hetero	INTERGENIC
SBS	Chr5	17714881	G-A	Hetero	INTERGENIC
SBS	Chr5	22472401	C-T	Homo	INTERGENIC
SBS	Chr5	24467839	G-A	Homo	INTRON
SBS	Chr5	24467840	G-A	Homo	INTRON
SBS	Chr6	9897073	G-A	Hetero	INTERGENIC
SBS	Chr6	9897074	T-A	Hetero	INTERGENIC
SBS	Chr6	15706597	C-T	Hetero	INTERGENIC
SBS	Chr6	16172540	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	12230125	C-T	Hetero	INTERGENIC
SBS	Chr9	4652400	T-C	Homo	INTERGENIC
SBS	Chr9	16015351	C-T	Hetero	INTERGENIC
SBS	Chr9	20821828	T-C	Hetero	INTERGENIC
SBS	Chr10	13493620	G-A	Hetero	INTRON
SBS	Chr11	7586717	G-T	Homo	INTERGENIC
SBS	Chr11	7586718	A-T	Homo	INTERGENIC
SBS	Chr12	655476	G-A	Hetero	INTERGENIC
SBS	Chr12	24102410	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4776647	4776649	2
Deletion	Chr8	6744510	6744518	8
Deletion	Chr8	7152499	7152529	30
Deletion	Chr5	10235931	10235934	3
Deletion	Chr12	11643581	11643587	6
Deletion	Chr7	12340679	12340680	1
Deletion	Chr5	16626230	16626250	20
Deletion	Chr6	17403415	17403426	11
Deletion	Chr2	19173843	19173846	3
Deletion	Chr4	20183764	20183765	1
Deletion	Chr12	20541652	20541660	8
Deletion	Chr12	23244434	23244445	11
Deletion	Chr12	25604661	25604666	5
Deletion	Chr2	33109541	33109543	2
Deletion	Chr3	33113959	33113966	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	26723720	27581608	OsKitaake02g277300
Inversion	Chr2	26723725	27581626	OsKitaake02g277300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes