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Mutant Information

Mutant Name	FN3242-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3242-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2263746 G-A Hetero INTERGENIC
SBS Chr1 20542393 C-T Homo INTERGENIC
SBS Chr1 29523139 G-T Hetero INTERGENIC
SBS Chr1 29654224 C-T Hetero INTERGENIC
SBS Chr1 33214323 A-C Hetero INTERGENIC
SBS Chr2 13350750 A-T Hetero INTERGENIC
SBS Chr2 13973123 G-A Hetero INTERGENIC
SBS Chr2 22940804 T-C Homo INTERGENIC
SBS Chr2 25056781 C-T Homo INTERGENIC
SBS Chr3 15201939 C-G Hetero INTERGENIC
SBS Chr3 28914254 C-T Hetero INTERGENIC
SBS Chr4 8321175 G-C Hetero UTR_3_PRIME
SBS Chr4 15588052 G-A Hetero INTERGENIC
SBS Chr5 4777399 G-A Hetero INTERGENIC
SBS Chr5 6883601 A-T Hetero INTERGENIC
SBS Chr5 8564253 A-T Hetero INTERGENIC
SBS Chr5 15896295 C-T Hetero INTERGENIC
SBS Chr5 21137754 G-T Hetero UTR_3_PRIME
SBS Chr6 25435963 G-A Hetero INTERGENIC
SBS Chr7 681917 C-T Hetero INTERGENIC
SBS Chr7 20100970 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g165000
SBS Chr7 20100971 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g165000
SBS Chr7 20955257 A-G Hetero INTERGENIC
SBS Chr7 27303969 C-T Hetero INTERGENIC
SBS Chr8 24234030 G-T Hetero INTERGENIC
SBS Chr9 21161688 A-G Homo INTERGENIC
SBS Chr10 12247204 G-A Hetero INTERGENIC
SBS Chr10 17841196 G-A Hetero INTERGENIC
SBS Chr10 19870555 A-T Hetero SYNONYMOUS_CODING
SBS Chr10 21302004 T-C Hetero INTERGENIC
SBS Chr10 21659325 T-A Hetero INTERGENIC
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr11 23830422 C-A Hetero INTERGENIC
SBS Chr12 736644 T-A Hetero INTERGENIC
SBS Chr12 21551726 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1180839 1180845 6 OsKitaake06g013800
Deletion Chr5 6452001 6470000 17999 OsKitaake05g065900
Deletion Chr10 10959491 10959493 2
Deletion Chr3 14924474 14924482 8
Deletion Chr1 16252719 16252726 7
Deletion Chr9 16966131 16966137 6
Deletion Chr9 21161439 21161447 8
Deletion Chr2 22339575 22339581 6
Deletion Chr12 23714298 23714304 6
Deletion Chr4 24622682 24622689 7
Deletion Chr3 27337115 27337116 1
Deletion Chr6 27507253 27507254 1
Deletion Chr3 30370757 30370759 2
Deletion Chr3 34864314 34864316 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 18642171 19127645 OsKitaake12g137300
Inversion Chr12 18642183 19127648 OsKitaake12g137300
Inversion Chr4 32095047 32664742 2
Inversion Chr4 32095056 32667958 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18646470 Chr4 32667956 2
Translocation Chr9 18757245 Chr4 32664751 OsKitaake04g262600
Translocation Chr9 18758543 Chr4 7601055

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2263746	G-A	Hetero	INTERGENIC
SBS	Chr1	20542393	C-T	Homo	INTERGENIC
SBS	Chr1	29523139	G-T	Hetero	INTERGENIC
SBS	Chr1	29654224	C-T	Hetero	INTERGENIC
SBS	Chr1	33214323	A-C	Hetero	INTERGENIC
SBS	Chr2	13350750	A-T	Hetero	INTERGENIC
SBS	Chr2	13973123	G-A	Hetero	INTERGENIC
SBS	Chr2	22940804	T-C	Homo	INTERGENIC
SBS	Chr2	25056781	C-T	Homo	INTERGENIC
SBS	Chr3	15201939	C-G	Hetero	INTERGENIC
SBS	Chr3	28914254	C-T	Hetero	INTERGENIC
SBS	Chr4	8321175	G-C	Hetero	UTR_3_PRIME
SBS	Chr4	15588052	G-A	Hetero	INTERGENIC
SBS	Chr5	4777399	G-A	Hetero	INTERGENIC
SBS	Chr5	6883601	A-T	Hetero	INTERGENIC
SBS	Chr5	8564253	A-T	Hetero	INTERGENIC
SBS	Chr5	15896295	C-T	Hetero	INTERGENIC
SBS	Chr5	21137754	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	25435963	G-A	Hetero	INTERGENIC
SBS	Chr7	681917	C-T	Hetero	INTERGENIC
SBS	Chr7	20100970	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g165000
SBS	Chr7	20100971	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g165000
SBS	Chr7	20955257	A-G	Hetero	INTERGENIC
SBS	Chr7	27303969	C-T	Hetero	INTERGENIC
SBS	Chr8	24234030	G-T	Hetero	INTERGENIC
SBS	Chr9	21161688	A-G	Homo	INTERGENIC
SBS	Chr10	12247204	G-A	Hetero	INTERGENIC
SBS	Chr10	17841196	G-A	Hetero	INTERGENIC
SBS	Chr10	19870555	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21302004	T-C	Hetero	INTERGENIC
SBS	Chr10	21659325	T-A	Hetero	INTERGENIC
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr11	23830422	C-A	Hetero	INTERGENIC
SBS	Chr12	736644	T-A	Hetero	INTERGENIC
SBS	Chr12	21551726	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1180839	1180845	6	OsKitaake06g013800
Deletion	Chr5	6452001	6470000	17999	OsKitaake05g065900
Deletion	Chr10	10959491	10959493	2
Deletion	Chr3	14924474	14924482	8
Deletion	Chr1	16252719	16252726	7
Deletion	Chr9	16966131	16966137	6
Deletion	Chr9	21161439	21161447	8
Deletion	Chr2	22339575	22339581	6
Deletion	Chr12	23714298	23714304	6
Deletion	Chr4	24622682	24622689	7
Deletion	Chr3	27337115	27337116	1
Deletion	Chr6	27507253	27507254	1
Deletion	Chr3	30370757	30370759	2
Deletion	Chr3	34864314	34864316	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	18642171	19127645	OsKitaake12g137300
Inversion	Chr12	18642183	19127648	OsKitaake12g137300
Inversion	Chr4	32095047	32664742	2
Inversion	Chr4	32095056	32667958	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes