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Mutant Information

Mutant Name	FN3243-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3243-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4249648 A-T Hetero INTERGENIC
SBS Chr1 4366258 G-T Hetero INTERGENIC
SBS Chr1 4366259 C-T Hetero INTERGENIC
SBS Chr1 42942807 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g473300
SBS Chr1 43779949 G-A Homo INTRON
SBS Chr2 25643128 G-A Hetero INTERGENIC
SBS Chr3 1355612 G-T Hetero INTERGENIC
SBS Chr3 12914683 T-C Hetero INTRON
SBS Chr3 21048708 A-G Hetero UTR_5_PRIME
SBS Chr3 37105316 G-T Hetero SPLICE_SITE_REGION
SBS Chr4 4772678 C-T Hetero INTERGENIC
SBS Chr4 11335435 C-A Homo INTERGENIC
SBS Chr4 20727648 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g112300
SBS Chr4 20727649 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g112300
SBS Chr5 9001069 A-G Hetero INTERGENIC
SBS Chr5 18671153 T-C Homo INTERGENIC
SBS Chr5 21014952 C-T Hetero INTERGENIC
SBS Chr5 22227048 G-A Hetero INTERGENIC
SBS Chr6 1915311 T-C Hetero INTERGENIC
SBS Chr6 6183436 G-C Hetero INTERGENIC
SBS Chr6 19875623 C-T Homo INTERGENIC
SBS Chr7 21207027 C-T Hetero INTERGENIC
SBS Chr7 25362411 A-T Hetero INTERGENIC
SBS Chr7 25486726 G-T Hetero INTRON
SBS Chr8 3958208 C-T Hetero INTERGENIC
SBS Chr8 12350628 C-T Hetero INTERGENIC
SBS Chr8 22924666 A-T Hetero INTERGENIC
SBS Chr9 19560432 C-T Hetero INTRON
SBS Chr10 20497398 C-T Hetero INTERGENIC
SBS Chr10 20967048 G-T Hetero INTRON
SBS Chr11 3269839 A-T Hetero INTERGENIC
SBS Chr11 4811225 G-C Homo INTERGENIC
SBS Chr11 16720748 C-T Hetero INTERGENIC
SBS Chr11 22395594 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g177500
SBS Chr12 2241418 G-A Hetero INTRON
SBS Chr12 6552796 A-T Hetero INTERGENIC
SBS Chr12 11626744 C-A Homo INTERGENIC
SBS Chr12 12987759 C-T Hetero INTERGENIC
SBS Chr12 16645364 T-C Homo INTERGENIC
SBS Chr12 18662398 G-A Homo INTERGENIC
SBS Chr12 18662401 T-A Homo INTERGENIC
SBS Chr12 18662405 T-A Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 660644 660652 8
Deletion Chr5 1367001 1385000 17999 2
Deletion Chr7 3367916 3367921 5
Deletion Chr5 5826036 5826039 3
Deletion Chr4 10114557 10114569 12
Deletion Chr12 11581587 11581605 18
Deletion Chr2 12578198 12578199 1 OsKitaake02g141350
Deletion Chr1 16424001 16485000 60999 3
Deletion Chr1 16536001 16592000 55999 OsKitaake01g177000
Deletion Chr11 17557096 17557098 2
Deletion Chr3 18254100 18254101 1 OsKitaake03g222500
Deletion Chr5 18333057 18333062 5
Deletion Chr8 19061054 19061067 13
Deletion Chr4 19439001 19446000 6999 OsKitaake04g099601
Deletion Chr8 21651812 21651814 2
Deletion Chr12 21733660 21733661 1
Deletion Chr2 21870673 21870674 1
Deletion Chr5 22787292 22787298 6
Deletion Chr11 26656878 26656880 2
Deletion Chr6 27901809 27901810 1
Deletion Chr11 28032951 28032954 3
Deletion Chr4 34794791 34794808 17 OsKitaake04g290900
Deletion Chr2 35286942 35286944 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20981909 20981912 2
Insertion Chr3 7110908 7110913 4
Insertion Chr3 14939825 14939828 2
Insertion Chr4 6440389 6440392 2
Insertion Chr6 4897786 4897789 2
Insertion Chr8 23537187 23537190 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3169598 3253421 OsKitaake01g041400
Inversion Chr1 3253429 3341332
Inversion Chr1 16389690 16485248 OsKitaake01g176100
Inversion Chr1 16389691 16540591 OsKitaake01g176100
Inversion Chr1 16485274 16588361

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9064478 Chr1 16389695 OsKitaake01g176100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4249648	A-T	Hetero	INTERGENIC
SBS	Chr1	4366258	G-T	Hetero	INTERGENIC
SBS	Chr1	4366259	C-T	Hetero	INTERGENIC
SBS	Chr1	42942807	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g473300
SBS	Chr1	43779949	G-A	Homo	INTRON
SBS	Chr2	25643128	G-A	Hetero	INTERGENIC
SBS	Chr3	1355612	G-T	Hetero	INTERGENIC
SBS	Chr3	12914683	T-C	Hetero	INTRON
SBS	Chr3	21048708	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	37105316	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr4	4772678	C-T	Hetero	INTERGENIC
SBS	Chr4	11335435	C-A	Homo	INTERGENIC
SBS	Chr4	20727648	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g112300
SBS	Chr4	20727649	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g112300
SBS	Chr5	9001069	A-G	Hetero	INTERGENIC
SBS	Chr5	18671153	T-C	Homo	INTERGENIC
SBS	Chr5	21014952	C-T	Hetero	INTERGENIC
SBS	Chr5	22227048	G-A	Hetero	INTERGENIC
SBS	Chr6	1915311	T-C	Hetero	INTERGENIC
SBS	Chr6	6183436	G-C	Hetero	INTERGENIC
SBS	Chr6	19875623	C-T	Homo	INTERGENIC
SBS	Chr7	21207027	C-T	Hetero	INTERGENIC
SBS	Chr7	25362411	A-T	Hetero	INTERGENIC
SBS	Chr7	25486726	G-T	Hetero	INTRON
SBS	Chr8	3958208	C-T	Hetero	INTERGENIC
SBS	Chr8	12350628	C-T	Hetero	INTERGENIC
SBS	Chr8	22924666	A-T	Hetero	INTERGENIC
SBS	Chr9	19560432	C-T	Hetero	INTRON
SBS	Chr10	20497398	C-T	Hetero	INTERGENIC
SBS	Chr10	20967048	G-T	Hetero	INTRON
SBS	Chr11	3269839	A-T	Hetero	INTERGENIC
SBS	Chr11	4811225	G-C	Homo	INTERGENIC
SBS	Chr11	16720748	C-T	Hetero	INTERGENIC
SBS	Chr11	22395594	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g177500
SBS	Chr12	2241418	G-A	Hetero	INTRON
SBS	Chr12	6552796	A-T	Hetero	INTERGENIC
SBS	Chr12	11626744	C-A	Homo	INTERGENIC
SBS	Chr12	12987759	C-T	Hetero	INTERGENIC
SBS	Chr12	16645364	T-C	Homo	INTERGENIC
SBS	Chr12	18662398	G-A	Homo	INTERGENIC
SBS	Chr12	18662401	T-A	Homo	INTERGENIC
SBS	Chr12	18662405	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	660644	660652	8
Deletion	Chr5	1367001	1385000	17999	2
Deletion	Chr7	3367916	3367921	5
Deletion	Chr5	5826036	5826039	3
Deletion	Chr4	10114557	10114569	12
Deletion	Chr12	11581587	11581605	18
Deletion	Chr2	12578198	12578199	1	OsKitaake02g141350
Deletion	Chr1	16424001	16485000	60999	3
Deletion	Chr1	16536001	16592000	55999	OsKitaake01g177000
Deletion	Chr11	17557096	17557098	2
Deletion	Chr3	18254100	18254101	1	OsKitaake03g222500
Deletion	Chr5	18333057	18333062	5
Deletion	Chr8	19061054	19061067	13
Deletion	Chr4	19439001	19446000	6999	OsKitaake04g099601
Deletion	Chr8	21651812	21651814	2
Deletion	Chr12	21733660	21733661	1
Deletion	Chr2	21870673	21870674	1
Deletion	Chr5	22787292	22787298	6
Deletion	Chr11	26656878	26656880	2
Deletion	Chr6	27901809	27901810	1
Deletion	Chr11	28032951	28032954	3
Deletion	Chr4	34794791	34794808	17	OsKitaake04g290900
Deletion	Chr2	35286942	35286944	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3169598	3253421	OsKitaake01g041400
Inversion	Chr1	3253429	3341332
Inversion	Chr1	16389690	16485248	OsKitaake01g176100
Inversion	Chr1	16389691	16540591	OsKitaake01g176100
Inversion	Chr1	16485274	16588361

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes