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| Mutant Information |
|---|
| Mutant Name | FN3245-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3245-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 16
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3351763 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 14054508 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g161700 |
| SBS | Chr2 | 21634062 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30073865 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 25582481 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31790498 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5518099 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13398805 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 36222062 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1909366 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 29143534 | C-G | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 29143535 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 1948722 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 12690445 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 3342639 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 23858249 | G-A | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 5112001 | 5131000 | 18999 | 5 |
| Deletion | Chr10 | 8654782 | 8654829 | 47 | OsKitaake10g053166 |
| Deletion | Chr1 | 9643001 | 9670000 | 26999 | 2 |
| Deletion | Chr1 | 26048001 | 26069000 | 20999 | |
| Deletion | Chr4 | 30265010 | 30265021 | 11 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 15427052 | 15427054 | 1 | OsKitaake05g118300  |
| Insertion | Chr5 | 30012903 | 30012905 | 1 | |
| Insertion | Chr7 | 11992111 | 11992113 | 1 | |
| Insertion | Chr12 | 23333501 | 23333506 | 4 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 24895045 | 25299512 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 8478118 | Chr1 | 3101852 |