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| Mutant Information |
|---|
| Mutant Name | FN3248-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3248-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2801604 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 26076181 | C-A | Homo | INTRON | |
| SBS | Chr2 | 9890556 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 15460650 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 23336563 | T-A | Hetero | STOP_GAINED | OsKitaake02g228200 |
| SBS | Chr2 | 32251741 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35755293 | C-T | Homo | INTRON | |
| SBS | Chr3 | 7058427 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22050642 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30423899 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5876029 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 139023 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 17220914 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 28863920 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 13089568 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 437848 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 8516780 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11725060 | G-A | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 4423001 | 4438000 | 14999 | OsKitaake03g063800 |
| Deletion | Chr2 | 23959001 | 23978000 | 18999 | 2 |
| Deletion | Chr7 | 24541001 | 24558000 | 16999 | OsKitaake07g218700 |
| Deletion | Chr12 | 25986295 | 25986297 | 2 | |
| Deletion | Chr12 | 26416853 | 26416854 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2699286 | 2699288 | 1 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 640975 | Chr3 | 25095655 | |
| Translocation | Chr9 | 642083 | Chr2 | 11165456 | OsKitaake02g130100 |
| Translocation | Chr3 | 25095051 | Chr2 | 11165073 | OsKitaake02g130100 |