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Mutant Information

Mutant Name	FN3250-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3250-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6705388 G-A Hetero INTERGENIC
SBS Chr1 20010179 A-T Hetero INTERGENIC
SBS Chr2 1929833 G-A Hetero INTERGENIC
SBS Chr3 2403571 C-T Hetero INTERGENIC
SBS Chr3 5429736 C-T Homo INTERGENIC
SBS Chr3 7621779 C-T Homo INTERGENIC
SBS Chr3 15844393 C-T Hetero INTRON
SBS Chr3 15844396 A-C Hetero INTRON
SBS Chr3 20621597 C-G Hetero INTERGENIC
SBS Chr3 22629105 T-C Hetero INTERGENIC
SBS Chr3 25979292 A-G Hetero START_GAINED
SBS Chr3 27379722 G-C Hetero INTERGENIC
SBS Chr4 5349317 G-A Hetero INTERGENIC
SBS Chr4 10322307 G-A Homo INTERGENIC
SBS Chr5 14026283 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g108300
SBS Chr5 14854179 C-T Hetero INTERGENIC
SBS Chr5 29692020 G-T Hetero INTERGENIC
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr7 886059 T-C Hetero INTERGENIC
SBS Chr7 11105726 G-T Hetero INTERGENIC
SBS Chr7 16908715 G-A Hetero INTERGENIC
SBS Chr7 19216628 G-A Hetero SPLICE_SITE_REGION
SBS Chr7 23444509 C-T Homo INTERGENIC
SBS Chr8 919642 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 6542507 G-A Hetero INTERGENIC
SBS Chr8 17520794 T-A Homo INTERGENIC
SBS Chr8 17603028 G-A Homo INTRON
SBS Chr10 1642719 G-A Hetero INTERGENIC
SBS Chr10 12742553 A-G Homo INTERGENIC
SBS Chr10 13361552 T-G Homo INTERGENIC
SBS Chr10 18355752 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g129700
SBS Chr10 20201674 G-A Hetero INTERGENIC
SBS Chr11 20164716 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g157600
SBS Chr12 3142809 G-A Hetero INTERGENIC
SBS Chr12 3537419 A-G Hetero INTERGENIC
SBS Chr12 19899271 C-G Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 777781 777782 1
Deletion Chr3 2275070 2275071 1
Deletion Chr7 2518014 2518016 2
Deletion Chr5 4189493 4189498 5
Deletion Chr11 5903697 5903709 12
Deletion Chr11 8214842 8214855 13
Deletion Chr12 8597238 8597239 1
Deletion Chr9 12854543 12854554 11
Deletion Chr9 16691181 16691187 6
Deletion Chr2 19532001 19538000 5999
Deletion Chr5 23711151 23711156 5
Deletion Chr3 27247922 27247926 4
Deletion Chr4 27800426 27800442 16 OsKitaake04g205400
Deletion Chr2 28268001 28294000 25999 2
Deletion Chr5 28544765 28544770 5
Deletion Chr7 29251001 29255000 3999 2
Deletion Chr2 30114335 30114336 1
Deletion Chr2 31399001 31429000 29999 OsKitaake02g321816
Deletion Chr3 31799417 31799431 14
Deletion Chr3 32640410 32640411 1
Deletion Chr2 34746259 34746276 17 OsKitaake02g362200
Deletion Chr3 37346979 37346990 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6366225 6366230 4
Insertion Chr4 8382157 8382159 1
Insertion Chr7 17016287 17016290 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11475508 11554800
Inversion Chr1 11475535 11554804
Inversion Chr1 22186922 22338200
Inversion Chr1 22186927 22338215

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12391392 Chr1 26726190

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6705388	G-A	Hetero	INTERGENIC
SBS	Chr1	20010179	A-T	Hetero	INTERGENIC
SBS	Chr2	1929833	G-A	Hetero	INTERGENIC
SBS	Chr3	2403571	C-T	Hetero	INTERGENIC
SBS	Chr3	5429736	C-T	Homo	INTERGENIC
SBS	Chr3	7621779	C-T	Homo	INTERGENIC
SBS	Chr3	15844393	C-T	Hetero	INTRON
SBS	Chr3	15844396	A-C	Hetero	INTRON
SBS	Chr3	20621597	C-G	Hetero	INTERGENIC
SBS	Chr3	22629105	T-C	Hetero	INTERGENIC
SBS	Chr3	25979292	A-G	Hetero	START_GAINED
SBS	Chr3	27379722	G-C	Hetero	INTERGENIC
SBS	Chr4	5349317	G-A	Hetero	INTERGENIC
SBS	Chr4	10322307	G-A	Homo	INTERGENIC
SBS	Chr5	14026283	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g108300
SBS	Chr5	14854179	C-T	Hetero	INTERGENIC
SBS	Chr5	29692020	G-T	Hetero	INTERGENIC
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr7	886059	T-C	Hetero	INTERGENIC
SBS	Chr7	11105726	G-T	Hetero	INTERGENIC
SBS	Chr7	16908715	G-A	Hetero	INTERGENIC
SBS	Chr7	19216628	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr7	23444509	C-T	Homo	INTERGENIC
SBS	Chr8	919642	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	6542507	G-A	Hetero	INTERGENIC
SBS	Chr8	17520794	T-A	Homo	INTERGENIC
SBS	Chr8	17603028	G-A	Homo	INTRON
SBS	Chr10	1642719	G-A	Hetero	INTERGENIC
SBS	Chr10	12742553	A-G	Homo	INTERGENIC
SBS	Chr10	13361552	T-G	Homo	INTERGENIC
SBS	Chr10	18355752	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g129700
SBS	Chr10	20201674	G-A	Hetero	INTERGENIC
SBS	Chr11	20164716	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g157600
SBS	Chr12	3142809	G-A	Hetero	INTERGENIC
SBS	Chr12	3537419	A-G	Hetero	INTERGENIC
SBS	Chr12	19899271	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	777781	777782	1
Deletion	Chr3	2275070	2275071	1
Deletion	Chr7	2518014	2518016	2
Deletion	Chr5	4189493	4189498	5
Deletion	Chr11	5903697	5903709	12
Deletion	Chr11	8214842	8214855	13
Deletion	Chr12	8597238	8597239	1
Deletion	Chr9	12854543	12854554	11
Deletion	Chr9	16691181	16691187	6
Deletion	Chr2	19532001	19538000	5999
Deletion	Chr5	23711151	23711156	5
Deletion	Chr3	27247922	27247926	4
Deletion	Chr4	27800426	27800442	16	OsKitaake04g205400
Deletion	Chr2	28268001	28294000	25999	2
Deletion	Chr5	28544765	28544770	5
Deletion	Chr7	29251001	29255000	3999	2
Deletion	Chr2	30114335	30114336	1
Deletion	Chr2	31399001	31429000	29999	OsKitaake02g321816
Deletion	Chr3	31799417	31799431	14
Deletion	Chr3	32640410	32640411	1
Deletion	Chr2	34746259	34746276	17	OsKitaake02g362200
Deletion	Chr3	37346979	37346990	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11475508	11554800
Inversion	Chr1	11475535	11554804
Inversion	Chr1	22186922	22338200
Inversion	Chr1	22186927	22338215

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes