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Mutant Information

Mutant Name	FN3251-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3251-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24405035 C-T Hetero INTERGENIC
SBS Chr1 30019623 G-A Hetero INTERGENIC
SBS Chr1 31960108 G-T Hetero INTERGENIC
SBS Chr1 31960551 A-T Hetero INTERGENIC
SBS Chr1 38677290 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g413300
SBS Chr2 33200398 T-C Hetero INTERGENIC
SBS Chr3 19195355 T-C Hetero INTERGENIC
SBS Chr3 19844860 A-T Hetero INTERGENIC
SBS Chr3 21528212 G-C Hetero INTERGENIC
SBS Chr3 28861066 G-A Hetero INTERGENIC
SBS Chr3 32172326 G-A Hetero UTR_5_PRIME
SBS Chr3 36060533 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 12532890 T-A Homo INTERGENIC
SBS Chr4 20557829 T-A Homo INTERGENIC
SBS Chr5 2932852 T-C Hetero INTERGENIC
SBS Chr5 2932853 C-A Hetero INTERGENIC
SBS Chr5 3479383 A-C Hetero INTERGENIC
SBS Chr5 27662549 T-A Hetero INTRON
SBS Chr6 13829815 T-G Hetero INTERGENIC
SBS Chr6 18107529 A-G Homo INTERGENIC
SBS Chr6 20402520 T-C Homo INTERGENIC
SBS Chr7 8474864 C-A Hetero INTERGENIC
SBS Chr7 19740454 C-T Hetero INTERGENIC
SBS Chr8 879715 T-C Hetero INTERGENIC
SBS Chr8 7514892 C-A Hetero INTERGENIC
SBS Chr8 26144917 C-T Hetero INTERGENIC
SBS Chr9 1422415 G-A Hetero INTERGENIC
SBS Chr10 4305756 T-C Hetero INTERGENIC
SBS Chr10 6389033 A-C Hetero INTERGENIC
SBS Chr10 8287815 T-G Hetero INTERGENIC
SBS Chr10 18677511 A-C Hetero INTERGENIC
SBS Chr10 19419098 T-C Hetero INTERGENIC
SBS Chr11 8810491 C-T Hetero INTERGENIC
SBS Chr11 12274285 C-T Hetero INTRON
SBS Chr11 12284039 T-C Hetero INTERGENIC
SBS Chr11 14234727 G-A Hetero INTRON
SBS Chr12 9297185 T-A Hetero INTERGENIC
SBS Chr12 9297186 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1364001 1385000 20999 2
Deletion Chr11 2882001 2891000 8999 2
Deletion Chr9 9360763 9360764 1
Deletion Chr1 9646001 9659000 12999 OsKitaake01g123400
Deletion Chr6 10045497 10045504 7
Deletion Chr7 11065001 11085000 19999 OsKitaake07g104332
Deletion Chr12 12600001 12618000 17999 5
Deletion Chr9 16286211 16286220 9
Deletion Chr10 19939001 20028000 88999 13
Deletion Chr4 24464001 24476000 11999
Deletion Chr8 26355001 26367000 11999 2
Deletion Chr12 26721001 26740000 18999 OsKitaake12g222100
Deletion Chr11 27961674 27961677 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 34075743 34075746 2
Insertion Chr2 26437338 26437341 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4939797 5141571
Inversion Chr2 7791252 8162866
Inversion Chr2 7791262 8162876
Inversion Chr10 19937721 20084472
Inversion Chr1 34717710 34925976

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 28187705 Chr3 34487207 2
Translocation Chr11 28187899 Chr3 34487206 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24405035	C-T	Hetero	INTERGENIC
SBS	Chr1	30019623	G-A	Hetero	INTERGENIC
SBS	Chr1	31960108	G-T	Hetero	INTERGENIC
SBS	Chr1	31960551	A-T	Hetero	INTERGENIC
SBS	Chr1	38677290	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g413300
SBS	Chr2	33200398	T-C	Hetero	INTERGENIC
SBS	Chr3	19195355	T-C	Hetero	INTERGENIC
SBS	Chr3	19844860	A-T	Hetero	INTERGENIC
SBS	Chr3	21528212	G-C	Hetero	INTERGENIC
SBS	Chr3	28861066	G-A	Hetero	INTERGENIC
SBS	Chr3	32172326	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	36060533	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	12532890	T-A	Homo	INTERGENIC
SBS	Chr4	20557829	T-A	Homo	INTERGENIC
SBS	Chr5	2932852	T-C	Hetero	INTERGENIC
SBS	Chr5	2932853	C-A	Hetero	INTERGENIC
SBS	Chr5	3479383	A-C	Hetero	INTERGENIC
SBS	Chr5	27662549	T-A	Hetero	INTRON
SBS	Chr6	13829815	T-G	Hetero	INTERGENIC
SBS	Chr6	18107529	A-G	Homo	INTERGENIC
SBS	Chr6	20402520	T-C	Homo	INTERGENIC
SBS	Chr7	8474864	C-A	Hetero	INTERGENIC
SBS	Chr7	19740454	C-T	Hetero	INTERGENIC
SBS	Chr8	879715	T-C	Hetero	INTERGENIC
SBS	Chr8	7514892	C-A	Hetero	INTERGENIC
SBS	Chr8	26144917	C-T	Hetero	INTERGENIC
SBS	Chr9	1422415	G-A	Hetero	INTERGENIC
SBS	Chr10	4305756	T-C	Hetero	INTERGENIC
SBS	Chr10	6389033	A-C	Hetero	INTERGENIC
SBS	Chr10	8287815	T-G	Hetero	INTERGENIC
SBS	Chr10	18677511	A-C	Hetero	INTERGENIC
SBS	Chr10	19419098	T-C	Hetero	INTERGENIC
SBS	Chr11	8810491	C-T	Hetero	INTERGENIC
SBS	Chr11	12274285	C-T	Hetero	INTRON
SBS	Chr11	12284039	T-C	Hetero	INTERGENIC
SBS	Chr11	14234727	G-A	Hetero	INTRON
SBS	Chr12	9297185	T-A	Hetero	INTERGENIC
SBS	Chr12	9297186	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1364001	1385000	20999	2
Deletion	Chr11	2882001	2891000	8999	2
Deletion	Chr9	9360763	9360764	1
Deletion	Chr1	9646001	9659000	12999	OsKitaake01g123400
Deletion	Chr6	10045497	10045504	7
Deletion	Chr7	11065001	11085000	19999	OsKitaake07g104332
Deletion	Chr12	12600001	12618000	17999	5
Deletion	Chr9	16286211	16286220	9
Deletion	Chr10	19939001	20028000	88999	13
Deletion	Chr4	24464001	24476000	11999
Deletion	Chr8	26355001	26367000	11999	2
Deletion	Chr12	26721001	26740000	18999	OsKitaake12g222100
Deletion	Chr11	27961674	27961677	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4939797	5141571
Inversion	Chr2	7791252	8162866
Inversion	Chr2	7791262	8162876
Inversion	Chr10	19937721	20084472
Inversion	Chr1	34717710	34925976

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes